Variant report

Variant	rs12635773
Chromosome Location	chr3:150805173-150805174
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12633145	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12633262	0.85[ASN][1000 genomes]
rs12633553	0.81[ASN][1000 genomes]
rs12637362	0.81[ASN][1000 genomes]
rs16863151	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6806896	0.81[ASN][1000 genomes]
rs73155774	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2753152	chr3:150773248-150810545	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150802600-150805200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:150802600-150805400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:150802600-150805400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:150802600-150805600	Active TSS	H9 Cell Line	embryonic stem cell
5	chr3:150802600-150805600	Active TSS	Fetal Brain Female	brain
6	chr3:150802600-150805600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr3:150802600-150806600	Active TSS	Brain Angular Gyrus	brain
8	chr3:150802600-150806600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:150802600-150806800	Active TSS	Brain Cingulate Gyrus	brain
10	chr3:150802800-150805200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:150802800-150805200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr3:150802800-150805200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:150802800-150805400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr3:150802800-150805400	Active TSS	Right Atrium	heart
15	chr3:150802800-150805600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:150802800-150805600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:150802800-150805600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:150802800-150805600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:150802800-150806000	Active TSS	Brain Substantia Nigra	brain
20	chr3:150803000-150805200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:150803000-150805200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr3:150803000-150805200	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr3:150803000-150805200	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr3:150803000-150805200	Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr3:150803000-150805200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr3:150803000-150805200	Active TSS	Rectal Smooth Muscle	rectum
27	chr3:150803000-150805400	Active TSS	H1 Cell Line	embryonic stem cell
28	chr3:150803000-150805400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:150803000-150805600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr3:150803000-150806400	Active TSS	Brain Anterior Caudate	brain
31	chr3:150803000-150806600	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr3:150803200-150805200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:150803200-150805200	Active TSS	Primary hematopoietic stem cells	blood
34	chr3:150803200-150805200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:150803200-150805200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:150803200-150805200	Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr3:150803200-150805200	Active TSS	Colon Smooth Muscle	Colon
38	chr3:150803200-150805200	Active TSS	Psoas Muscle	Psoas
39	chr3:150803200-150805200	Active TSS	Right Ventricle	heart
40	chr3:150803200-150805200	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr3:150803200-150805200	Active TSS	NH-A	brain
42	chr3:150803200-150805200	Bivalent/Poised TSS	NHLF	lung
43	chr3:150803200-150805400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:150803200-150805400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr3:150803200-150805400	Active TSS	Primary T cells from cord blood	blood
46	chr3:150803200-150805400	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr3:150803200-150805400	Active TSS	Ovary	ovary
48	chr3:150803200-150805600	Active TSS	Fetal Intestine Small	intestine
49	chr3:150803200-150805800	Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr3:150803400-150805200	Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links