Variant report

Variant	rs12636392
Chromosome Location	chr3:56560291-56560292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10222449	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10222462	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865998	0.83[EUR][1000 genomes]
rs11706624	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12636773	0.84[EUR][1000 genomes]
rs12715490	0.84[EUR][1000 genomes]
rs13097030	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1352766	0.85[EUR][1000 genomes]
rs1388251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1491166	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17056878	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2035798	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2054987	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2054988	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28407059	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4093514	0.87[EUR][1000 genomes]
rs4681951	0.82[EUR][1000 genomes]
rs4974220	0.82[EUR][1000 genomes]
rs4974224	0.87[EUR][1000 genomes]
rs6765870	0.86[EUR][1000 genomes]
rs6784100	0.83[EUR][1000 genomes]
rs6785479	0.82[EUR][1000 genomes]
rs6798118	0.82[EUR][1000 genomes]
rs6799576	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6805469	0.82[EUR][1000 genomes]
rs72877266	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7626378	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7646924	0.81[AMR][1000 genomes]
rs7647272	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9811046	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9836539	0.83[EUR][1000 genomes]
rs9842283	0.85[EUR][1000 genomes]
rs9881005	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9881789	0.85[EUR][1000 genomes]
rs9881961	0.84[EUR][1000 genomes]
rs9985253	0.85[EUR][1000 genomes]
rs9985254	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv876817	chr3:56517253-56649282	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56556600-56560800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:56556800-56560800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:56559400-56561200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr3:56559400-56561400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:56559600-56560600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:56560000-56561000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:56560200-56561200	Enhancers	Brain Germinal Matrix	brain

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