Variant report

Variant	rs12637573
Chromosome Location	chr3:121682388-121682389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10049074	0.87[EUR][1000 genomes]
rs10934568	0.90[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10934570	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs13074085	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1920289	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332034	0.81[EUR][1000 genomes]
rs4325959	0.82[EUR][1000 genomes]
rs6793566	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6793858	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9811389	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9812694	0.87[AFR][1000 genomes]
rs9812869	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9824120	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs9825193	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844039	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9863154	0.83[EUR][1000 genomes]
rs9871743	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33139	chr3:121500400-122091831	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12637573	SLC15A2	Cis_1M	lymphoblastoid	RTeQTL
rs12637573	SLC15A2	cis	Muscle Skeletal	GTEx
rs12637573	SLC15A2	cis	Artery Tibial	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:121670400-121686800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:121678800-121693400	Weak transcription	Primary B cells from cord blood	blood
3	chr3:121682000-121683000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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