Variant report

Variant	rs12639169
Chromosome Location	chr3:80281871-80281872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12629039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12634529	0.89[ASN][1000 genomes]
rs73852680	0.82[ASN][1000 genomes]
rs73852695	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv997786	chr3:80008898-80489031	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv536598	chr3:80008898-80489031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv877030	chr3:80013063-80444843	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1014658	chr3:80035786-80716259	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv536599	chr3:80035786-80716259	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv997720	chr3:80035786-80745662	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1012046	chr3:80125918-80482086	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3391878	chr3:80254971-80474866	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80280800-80282600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:80281400-80283000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:80281400-80284000	Enhancers	NH-A	brain
4	chr3:80281600-80282200	Enhancers	HUVEC	blood vessel
5	chr3:80281600-80282600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:80281600-80282600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:80281600-80282600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:80281600-80282800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr3:80281600-80282800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr3:80281600-80283000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr3:80281600-80283200	Enhancers	NHEK	skin
12	chr3:80281800-80282000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:80281800-80282200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr3:80281800-80282200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:80281800-80282200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:80281800-80282200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:80281800-80282200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:80281800-80282200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:80281800-80282800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr3:80281800-80282800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr3:80281800-80282800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:80281800-80282800	Enhancers	Hela-S3	cervix
23	chr3:80281800-80283000	Enhancers	H9 Cell Line	embryonic stem cell
24	chr3:80281800-80283200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:80281800-80283200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr3:80281800-80283200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:80281800-80283200	Enhancers	HMEC	breast

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