Variant report

Variant	rs12641802
Chromosome Location	chr4:190878472-190878473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIX5	chr4:190878448-190878717	K562	blood:	n/a	n/a
2	SP1	chr4:190878460-190878854	GM12878	blood:	n/a	n/a
3	STAT3	chr4:190878468-190878958	MCF10A-Er-Src	breast:	n/a	chr4:190878933-190878944
4	RXRA	chr4:190878408-190878794	HepG2	liver:	n/a	n/a
5	RXRA	chr4:190878445-190878750	GM12878	blood:	n/a	n/a
6	SIX5	chr4:190878321-190878770	GM12878	blood:	n/a	n/a
7	SP1	chr4:190878398-190878779	GM12878	blood:	n/a	n/a
8	ZBTB33	chr4:190878436-190878733	K562	blood:	n/a	n/a
9	IRF4	chr4:190878441-190878794	GM12878	blood:	n/a	n/a
10	ZBTB33	chr4:190878452-190878961	HepG2	liver:	n/a	n/a
11	SIN3AK20	chr4:190878441-190878708	HepG2	liver:	n/a	n/a
12	RXRA	chr4:190878418-190878751	HepG2	liver:	n/a	n/a
13	FOSL2	chr4:190878467-190878788	HepG2	liver:	n/a	n/a
14	EP300	chr4:190878437-190878775	GM12878	blood:	n/a	n/a
15	GATA2	chr4:190878435-190878757	K562	blood:	n/a	n/a

Variant related genes	Relation type
FRG1	TF binding region

rs_ID	r²[population]
rs12649488	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:190862600-190881000	Weak transcription	Spleen	Spleen
2	chr4:190863000-190880800	Weak transcription	Brain Angular Gyrus	brain
3	chr4:190863200-190879400	Weak transcription	Gastric	stomach
4	chr4:190863200-190880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:190863200-190880400	Weak transcription	Fetal Intestine Small	intestine
6	chr4:190863200-190880800	Weak transcription	HSMMtube	muscle
7	chr4:190863200-190882000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:190863600-190878800	Weak transcription	Brain Germinal Matrix	brain
9	chr4:190863600-190882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:190863800-190880200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:190863800-190881000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:190864200-190879400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:190866800-190879400	Weak transcription	Fetal Heart	heart
14	chr4:190866800-190881000	Weak transcription	Stomach Mucosa	stomach
15	chr4:190867000-190878800	Weak transcription	GM12878-XiMat	blood
16	chr4:190869000-190880000	Weak transcription	Fetal Stomach	stomach
17	chr4:190870000-190879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:190870400-190880000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:190870400-190880000	Weak transcription	Esophagus	oesophagus
20	chr4:190870400-190880600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:190870400-190881000	Weak transcription	Lung	lung
22	chr4:190871400-190880000	Weak transcription	Thymus	Thymus
23	chr4:190871400-190884400	Weak transcription	Brain Substantia Nigra	brain
24	chr4:190871600-190879400	Weak transcription	Small Intestine	intestine
25	chr4:190872800-190880600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr4:190873000-190879400	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr4:190873800-190879400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:190873800-190880000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr4:190873800-190880200	Strong transcription	K562	blood
30	chr4:190873800-190880600	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:190873800-190880600	Strong transcription	Placenta	Placenta
32	chr4:190874400-190879000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:190874400-190879600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:190874400-190880400	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr4:190874400-190881000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr4:190874600-190882200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr4:190874600-190885400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr4:190875200-190881000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr4:190875400-190879600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:190875400-190881000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr4:190875600-190879400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr4:190875800-190879200	Strong transcription	Dnd41	blood
43	chr4:190875800-190880400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:190875800-190881000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr4:190875800-190882200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:190875800-190884400	Strong transcription	Adipose Nuclei	Adipose
47	chr4:190876000-190879200	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:190876000-190884200	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:190876000-190885400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
50	chr4:190876200-190880000	Strong transcription	Muscle Satellite Cultured Cells	--

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