Variant report

Variant	rs12641862
Chromosome Location	chr4:27042335-27042336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12642922	0.82[ASN][1000 genomes]
rs12649969	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16878719	0.84[ASN][1000 genomes]
rs16878720	0.84[ASN][1000 genomes]
rs62299310	0.84[ASN][1000 genomes]
rs7654400	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7681425	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12641862	STIM2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27041000-27042800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr4:27041800-27042400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr4:27041800-27042400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr4:27041800-27042400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:27041800-27042400	Enhancers	Fetal Muscle Trunk	muscle
6	chr4:27041800-27042400	Enhancers	Left Ventricle	heart
7	chr4:27041800-27042400	Enhancers	Stomach Mucosa	stomach
8	chr4:27041800-27042600	Enhancers	Primary B cells from cord blood	blood
9	chr4:27041800-27042600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:27041800-27042600	Enhancers	Fetal Muscle Leg	muscle
11	chr4:27041800-27042800	Enhancers	Primary B cells from peripheral blood	blood
12	chr4:27041800-27042800	Enhancers	K562	blood
13	chr4:27041800-27043000	Enhancers	Adipose Nuclei	Adipose
14	chr4:27042000-27042400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr4:27042200-27042800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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