Variant report

Variant	rs12642996
Chromosome Location	chr4:3956850-3956851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr4:3956141-3957970	IMR90	lung:	n/a	n/a
2	POLR2A	chr4:3956268-3958143	Hela-S3	cervix:	n/a	n/a
3	EBF1	chr4:3955998-3957239	GM12878	blood:	n/a	chr4:3956520-3956530 chr4:3956521-3956530 chr4:3956519-3956532 chr4:3956521-3956530 chr4:3956519-3956530
4	TAF1	chr4:3956007-3957665	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr4:3955988-3957238	GM12892	blood:	n/a	n/a
6	POLR2A	chr4:3956175-3958289	K562	blood:	n/a	n/a
7	JUN	chr4:3956148-3957427	K562	blood:	n/a	chr4:3956402-3956410 chr4:3956400-3956412
8	JUND	chr4:3956813-3957357	HepG2	liver:	n/a	n/a
9	UBTF	chr4:3956805-3957102	K562	blood:	n/a	n/a
10	E2F6	chr4:3956507-3957184	K562	blood:	n/a	chr4:3957038-3957047
11	POLR2A	chr4:3956371-3957346	MCF-7	breast:	n/a	n/a
12	MXI1	chr4:3956427-3957830	GM12878	blood:	n/a	n/a
13	USF1	chr4:3956781-3957033	SK-N-SH_RA	brain:	n/a	n/a
14	POLR2A	chr4:3956325-3957319	K562	blood:	n/a	n/a
15	POLR2A	chr4:3956245-3958066	Raji	blood:	n/a	n/a
16	POU2F2	chr4:3954926-3957664	GM12891	blood:	n/a	n/a
17	ESR1	chr4:3956563-3957550	T-47D	breast:	n/a	chr4:3957405-3957422
18	HCFC1	chr4:3956216-3957891	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr4:3954683-3958609	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr4:3956291-3958321	A549	lung:	n/a	n/a
21	TAF1	chr4:3956428-3957402	A549	lung:	n/a	n/a
22	POLR2A	chr4:3956387-3957236	A549	lung:	n/a	n/a
23	TAF1	chr4:3956345-3957307	GM12891	blood:	n/a	n/a
24	TAF1	chr4:3956812-3957227	GM12892	blood:	n/a	n/a
25	MAX	chr4:3956324-3957839	K562	blood:	n/a	chr4:3957652-3957659 chr4:3956948-3956957 chr4:3957651-3957660 chr4:3957650-3957661 chr4:3957651-3957661 chr4:3957651-3957660 chr4:3956402-3956411 chr4:3956493-3956502 chr4:3957649-3957662 chr4:3957649-3957659 chr4:3957650-3957661 chr4:3957649-3957664 chr4:3957650-3957660 chr4:3956947-3956958
26	MXI1	chr4:3956800-3957302	H1-hESC	embryonic stem cell:	n/a	n/a
27	ELF1	chr4:3956336-3957827	GM12878	blood:	n/a	n/a
28	POU2F2	chr4:3956290-3957357	GM12891	blood:	n/a	n/a
29	MAX	chr4:3956352-3957800	GM12878	blood:	n/a	chr4:3957652-3957659 chr4:3956948-3956957 chr4:3957651-3957660 chr4:3957650-3957661 chr4:3957651-3957661 chr4:3957651-3957660 chr4:3956402-3956411 chr4:3956493-3956502 chr4:3957649-3957662 chr4:3957649-3957659 chr4:3957650-3957661 chr4:3957649-3957664 chr4:3957650-3957660 chr4:3956947-3956958
30	POLR2A	chr4:3956611-3957165	K562	blood:	n/a	n/a
31	YY1	chr4:3956809-3957029	K562	blood:	n/a	n/a
32	POLR2A	chr4:3956280-3957944	IMR90	lung:	n/a	n/a
33	FOSL2	chr4:3955981-3958813	HepG2	liver:	n/a	chr4:3958088-3958097 chr4:3956402-3956410 chr4:3956400-3956412
34	POLR2A	chr4:3956141-3957448	SK-N-MC	brain:	n/a	n/a
35	POLR2A	chr4:3956802-3957304	MCF-7	breast:	n/a	n/a
36	POLR2A	chr4:3956440-3957566	HepG2	liver:	n/a	n/a
37	PML	chr4:3956426-3957162	GM12878	blood:	n/a	n/a
38	POLR2A	chr4:3955916-3958606	Hela-S3	cervix:	n/a	n/a
39	RXRA	chr4:3955994-3957315	HepG2	liver:	n/a	n/a
40	POLR2A	chr4:3956834-3957343	ECC-1	luminal epithelium:	n/a	n/a
41	POLR2A	chr4:3956834-3957207	ECC-1	luminal epithelium:	n/a	n/a
42	YY1	chr4:3956840-3957350	GM12892	blood:	n/a	chr4:3957038-3957047
43	IRF4	chr4:3956261-3957253	GM12878	blood:	n/a	n/a
44	TCF12	chr4:3956795-3957220	GM12878	blood:	n/a	chr4:3956863-3956873
45	GABPA	chr4:3956769-3957277	HepG2	liver:	n/a	n/a
46	MYC	chr4:3956395-3957848	K562	blood:	n/a	chr4:3957652-3957659 chr4:3956948-3956957 chr4:3957651-3957660 chr4:3957650-3957661 chr4:3957651-3957661 chr4:3957651-3957660 chr4:3956402-3956411 chr4:3956493-3956502 chr4:3957649-3957662 chr4:3957649-3957659 chr4:3957650-3957661 chr4:3957649-3957664 chr4:3957650-3957660 chr4:3956947-3956958
47	MXI1	chr4:3956271-3957837	Hela-S3	cervix:	n/a	n/a
48	YY1	chr4:3956766-3957317	A549	lung:	n/a	chr4:3957038-3957047
49	SIN3AK20	chr4:3956825-3957303	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr4:3956322-3957548	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:88717065..88717765-chr4:3956553..3957490,2	HCT-116	colon:
2	chr11:67572608..67573347-chr4:3956745..3957344,2	Hela-S3	cervix:

Variant related genes	Relation type
FAM86EP	TF binding region
ENSG00000051523	Chromatin interaction
ENSG00000160172	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10003461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10028165	1.00[AMR][1000 genomes]
rs10033950	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10034822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10155170	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12186172	0.83[ASN][1000 genomes]
rs12503629	0.83[ASN][1000 genomes]
rs12649600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28649228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3892782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4974747	0.82[ASN][1000 genomes]
rs55688351	0.81[ASN][1000 genomes]
rs57087257	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs59542442	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:64 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933265	chr4:3392824-4283640	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	esv2757918	chr4:3394344-4350986	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	esv2759219	chr4:3394344-4350986	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv1011554	chr4:3436478-3975772	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv537002	chr4:3436478-3975772	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv432549	chr4:3487321-3975048	Weak transcription Strong transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	esv2763838	chr4:3874896-4199043	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv1005868	chr4:3877778-4167133	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv2760820	chr4:3877790-4176629	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv998727	chr4:3879606-4186049	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
11	nsv1004354	chr4:3885796-4032775	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1007709	chr4:3885796-4057383	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	nsv1005413	chr4:3885796-4103332	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
14	nsv1009122	chr4:3885796-4119674	Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv1009623	chr4:3885796-4122816	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	esv1822040	chr4:3885796-4134988	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
17	nsv999221	chr4:3885796-4152748	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv1008577	chr4:3885796-4165335	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	nsv1007135	chr4:3885796-4167133	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
20	nsv1007614	chr4:3885796-4171323	Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
21	nsv1013710	chr4:3885796-4176617	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv1013938	chr4:3885796-4181990	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
23	nsv1011861	chr4:3885796-4185610	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv1011749	chr4:3885796-4186049	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv1003533	chr4:3885796-4192252	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
26	nsv1009192	chr4:3885796-4203890	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
27	nsv999919	chr4:3900840-4082936	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
28	nsv999754	chr4:3900840-4099676	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv1009515	chr4:3900840-4166506	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	nsv1008883	chr4:3900840-4167133	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv1009901	chr4:3900840-4175565	Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
32	nsv1012536	chr4:3900840-4176617	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
33	nsv1010973	chr4:3900840-4181990	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
34	nsv1002732	chr4:3900840-4184278	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
35	nsv1012590	chr4:3900840-4186049	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
36	nsv1015133	chr4:3900840-4192252	Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
37	nsv1006866	chr4:3900840-4203890	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
38	nsv1013161	chr4:3903702-4026777	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
39	nsv1007760	chr4:3903702-4203890	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
40	nsv998283	chr4:3903702-4210127	Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
41	nsv1012613	chr4:3909535-4113909	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
42	nsv1004434	chr4:3909535-4119674	Strong transcription Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
43	nsv997656	chr4:3909535-4120743	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
44	nsv1007512	chr4:3909535-4167133	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
45	nsv998453	chr4:3909535-4171323	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
46	nsv1013748	chr4:3909535-4175565	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
47	nsv1004915	chr4:3910872-4113909	Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
48	nsv1005566	chr4:3910872-4119674	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
49	nsv967721	chr4:3913659-4129876	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
50	nsv1000167	chr4:3913883-4030450	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3956000-3958400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:3956000-3958600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:3956200-3957000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:3956200-3957000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr4:3956200-3957000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:3956200-3957200	Active TSS	Primary T cells from cord blood	blood
7	chr4:3956200-3958000	Active TSS	GM12878-XiMat	blood
8	chr4:3956200-3958200	Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr4:3956200-3958400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:3956200-3958400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr4:3956200-3958400	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr4:3956200-3958400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:3956200-3958400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:3956200-3958400	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr4:3956200-3958400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr4:3956200-3958400	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr4:3956200-3958400	Active TSS	A549	lung
18	chr4:3956200-3958400	Active TSS	K562	blood
19	chr4:3956200-3958400	Active TSS	NHEK	skin
20	chr4:3956200-3958400	Active TSS	Osteobl	bone
21	chr4:3956200-3958600	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr4:3956200-3958600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr4:3956200-3958600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:3956200-3958600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr4:3956200-3958600	Active TSS	iPS-18 Cell Line	embryonic stem cell
26	chr4:3956200-3958600	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr4:3956200-3958600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr4:3956400-3957000	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr4:3956400-3957000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:3956400-3957000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr4:3956400-3957600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:3956400-3957800	Active TSS	Primary hematopoietic stem cells	blood
33	chr4:3956400-3957800	Active TSS	Stomach Smooth Muscle	stomach
34	chr4:3956400-3958200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr4:3956400-3958200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:3956400-3958200	Active TSS	Muscle Satellite Cultured Cells	--
37	chr4:3956400-3958200	Active TSS	Fetal Lung	lung
38	chr4:3956400-3958200	Active TSS	Placenta Amnion	Placenta Amnion
39	chr4:3956400-3958200	Active TSS	HSMMtube	muscle
40	chr4:3956400-3958400	Active TSS	H1 Cell Line	embryonic stem cell
41	chr4:3956400-3958400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:3956400-3958400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:3956400-3958400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:3956400-3958400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:3956400-3958400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr4:3956400-3958400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:3956400-3958400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:3956400-3958400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:3956400-3958400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:3956400-3958400	Active TSS	Brain Germinal Matrix	brain

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