Variant report

Variant	rs1264339
Chromosome Location	chr1:70210744-70210745
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1340768	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2000090	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70209000-70210800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:70209400-70211000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:70209600-70210800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:70209800-70210800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:70210000-70210800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:70210000-70210800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:70210200-70210800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:70210200-70211000	Enhancers	Brain Germinal Matrix	brain
9	chr1:70210400-70213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:70210600-70211000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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