Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152872168..152874146-chr4:152877195..152878789,2	K562	blood:

Variant related genes	Relation type
ENSG00000251249	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10517559	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11099836	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11099838	0.81[AMR][1000 genomes]
rs11731150	0.83[AFR][1000 genomes]
rs12503702	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13105209	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13122455	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13123677	0.92[AFR][1000 genomes]
rs1385782	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1531917	1.00[CEU][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17028306	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1813118	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1872314	1.00[CEU][hapmap]
rs2406809	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34321268	0.87[AFR][1000 genomes]
rs34493397	0.81[AMR][1000 genomes]
rs4696120	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4696309	0.81[AMR][1000 genomes]
rs55807675	0.93[AFR][1000 genomes]
rs6535830	0.94[MEX][hapmap]
rs7668707	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9307889	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs975820	1.00[CEU][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152870200-152874400	Weak transcription	Osteobl	bone
2	chr4:152870400-152872400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:152871800-152873000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:152871800-152873000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:152871800-152873800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr4:152872000-152872800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:152872200-152872800	Enhancers	Fetal Heart	heart
8	chr4:152872200-152873600	Enhancers	Fetal Brain Male	brain

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