Variant report

Variant	rs12646420
Chromosome Location	chr4:166544197-166544198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11721568	0.84[ASN][1000 genomes]
rs1246921	0.84[ASN][1000 genomes]
rs1246924	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1380347	0.84[ASN][1000 genomes]
rs1459506	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2256143	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830141	chr4:166502908-166689626	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166542400-166544200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:166542400-166548000	Enhancers	HUVEC	blood vessel
3	chr4:166543400-166544200	Enhancers	Primary hematopoietic stem cells	blood
4	chr4:166543400-166544800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:166543400-166545600	Weak transcription	HMEC	breast
6	chr4:166543600-166544600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:166543600-166544800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:166543600-166544800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:166543600-166545000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:166543600-166545800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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