Variant report

Variant	rs12650522
Chromosome Location	chr4:166987125-166987126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10011050	0.81[JPT][hapmap]
rs11730398	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1503302	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1503303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs16999566	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs2173307	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs2292082	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2292083	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs3756016	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap]
rs7664119	0.92[CEU][hapmap];0.84[JPT][hapmap]
rs7684252	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7693478	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap]
rs9997681	1.00[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv821638	chr4:166837633-167262625	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv830142	chr4:166935555-167095922	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034421	chr4:166961339-167893289	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537339	chr4:166961339-167893289	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166977000-167000800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr4:166987000-166987200	Enhancers	NHEK	skin
3	chr4:166987000-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:166987000-167004800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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