Variant report

Variant	rs12650847
Chromosome Location	chr4:126306884-126306885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10011289	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10212833	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13435740	0.81[ASN][1000 genomes]
rs1396695	0.92[ASN][1000 genomes]
rs1509285	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs17009473	0.92[CHB][hapmap]
rs17009497	1.00[JPT][hapmap]
rs17009611	1.00[JPT][hapmap]
rs17009615	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17009625	1.00[JPT][hapmap]
rs2016343	0.92[ASN][1000 genomes]
rs6816784	0.92[ASN][1000 genomes]
rs72675316	0.92[ASN][1000 genomes]
rs7666354	1.00[JPT][hapmap]
rs7688616	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7690603	0.90[EUR][1000 genomes]
rs974243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9994504	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv470070	chr4:126299145-126408586	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126290400-126309200	Weak transcription	HSMM	muscle
2	chr4:126290800-126317600	Weak transcription	Fetal Brain Male	brain
3	chr4:126296000-126311200	Weak transcription	Aorta	Aorta
4	chr4:126301000-126308400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:126302600-126309000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:126303800-126308200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:126304200-126309600	Weak transcription	Fetal Heart	heart
8	chr4:126304600-126309200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:126305000-126309200	Weak transcription	HUVEC	blood vessel
10	chr4:126305000-126310600	Weak transcription	Fetal Kidney	kidney
11	chr4:126305400-126309800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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