Variant report

Variant	rs12652359
Chromosome Location	chr5:146856101-146856102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35439984	1.00[ASN][1000 genomes]
rs55808466	0.94[ASN][1000 genomes]
rs6886930	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146835800-146858800	Weak transcription	NH-A	brain
2	chr5:146840000-146859200	Weak transcription	NHLF	lung
3	chr5:146842600-146857600	Weak transcription	Osteobl	bone
4	chr5:146844400-146857800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:146846600-146858000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr5:146846600-146863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:146849000-146859200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:146850600-146858800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:146851800-146859400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:146851800-146883000	Weak transcription	Psoas Muscle	Psoas
11	chr5:146852800-146858000	Weak transcription	Aorta	Aorta
12	chr5:146852800-146858800	Weak transcription	Fetal Stomach	stomach
13	chr5:146853400-146857400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:146853400-146858000	Weak transcription	Colon Smooth Muscle	Colon
15	chr5:146853400-146858800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr5:146853600-146858800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:146853800-146858000	Weak transcription	Ovary	ovary
18	chr5:146854000-146856800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:146854400-146858000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr5:146854600-146859400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:146854800-146856200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:146855000-146856200	Weak transcription	Brain Germinal Matrix	brain
23	chr5:146855200-146857000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:146856000-146856200	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:146856000-146856600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:146856000-146857000	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr5:146856000-146857000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr5:146856000-146857000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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