Variant report

Variant	rs12655514
Chromosome Location	chr5:57073365-57073366
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57071682..57076703-chr5:57754129..57758599,8	MCF-7	breast:
2	chr5:57071579..57076215-chr5:57753811..57758223,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10057880	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830310	chr5:56989346-57176006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2763454	chr5:57006531-57161140	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57062200-57075000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:57065400-57076000	Weak transcription	Aorta	Aorta
3	chr5:57070000-57074600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:57071200-57073400	Enhancers	HSMM	muscle
5	chr5:57071200-57075000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:57071200-57076400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:57071400-57073400	Flanking Active TSS	A549	lung
8	chr5:57071400-57073400	Enhancers	HepG2	liver
9	chr5:57071600-57073400	Enhancers	HSMMtube	muscle
10	chr5:57071800-57073400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:57071800-57076600	Enhancers	Fetal Lung	lung
12	chr5:57072000-57073600	Enhancers	Fetal Heart	heart
13	chr5:57072200-57073400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:57072200-57075400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr5:57072400-57074800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:57072400-57076400	Enhancers	Osteobl	bone
17	chr5:57072400-57076600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr5:57072600-57073600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:57072600-57074600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:57072600-57074800	Weak transcription	Brain Germinal Matrix	brain
21	chr5:57072600-57074800	Weak transcription	Fetal Muscle Leg	muscle
22	chr5:57072600-57079600	Weak transcription	Ovary	ovary
23	chr5:57072800-57073600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:57072800-57073800	Weak transcription	Fetal Intestine Large	intestine
25	chr5:57072800-57074200	Weak transcription	Stomach Mucosa	stomach
26	chr5:57072800-57075000	Weak transcription	HMEC	breast
27	chr5:57072800-57075600	Weak transcription	NHEK	skin
28	chr5:57073000-57074600	Weak transcription	Fetal Kidney	kidney
29	chr5:57073000-57075400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:57073000-57075600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:57073000-57075800	Enhancers	Liver	Liver
32	chr5:57073200-57075600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr5:57073200-57076000	Enhancers	HUVEC	blood vessel
34	chr5:57073200-57077000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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