Variant report

Variant	rs12655796
Chromosome Location	chr5:90490643-90490644
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10514346	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12187402	1.00[AFR][1000 genomes]
rs16869554	0.92[ASN][1000 genomes]
rs16869562	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs16869564	1.00[CEU][hapmap];0.82[JPT][hapmap];0.96[EUR][1000 genomes]
rs2063462	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2973433	0.82[EUR][1000 genomes]
rs35094765	1.00[AFR][1000 genomes]
rs57437843	0.97[ASN][1000 genomes]
rs61156097	0.97[ASN][1000 genomes]
rs72784648	1.00[AFR][1000 genomes]
rs72784690	1.00[AFR][1000 genomes]
rs73773320	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv508369	chr5:90487017-90518540	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90486400-90490800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:90486600-90491400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:90489400-90492000	Enhancers	Fetal Intestine Large	intestine
4	chr5:90489600-90492000	Enhancers	Fetal Intestine Small	intestine
5	chr5:90490200-90491200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:90490400-90491000	Enhancers	Brain Germinal Matrix	brain
7	chr5:90490400-90491200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:90490400-90491200	Enhancers	Fetal Muscle Leg	muscle
9	chr5:90490400-90491200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr5:90490400-90491200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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