Variant report

Variant	rs12655975
Chromosome Location	chr5:2213736-2213737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:2211700..2213965-chr5:2215705..2217902,2	K562	blood:
2	chr5:2211289..2213779-chr5:2754665..2756743,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11133937	0.87[CEU][hapmap];0.89[CHB][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12516024	0.98[EUR][1000 genomes]
rs12653402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658250	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12658255	1.00[AFR][1000 genomes]
rs12658661	1.00[AFR][1000 genomes]
rs12658676	1.00[AFR][1000 genomes]
rs12659152	1.00[AFR][1000 genomes]
rs16903506	1.00[AFR][1000 genomes]
rs16903516	1.00[AFR][1000 genomes]
rs16903550	1.00[AFR][1000 genomes]
rs16903554	1.00[AFR][1000 genomes]
rs16903629	1.00[AFR][1000 genomes]
rs2897242	1.00[AFR][1000 genomes]
rs35113715	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4262114	1.00[AFR][1000 genomes]
rs59236397	1.00[AFR][1000 genomes]
rs60785554	1.00[AFR][1000 genomes]
rs72491354	1.00[AFR][1000 genomes]
rs72491355	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72491356	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869236	chr5:1719263-2259100	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv880947	chr5:2146761-2251313	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv881232	chr5:2150273-2213762	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv880789	chr5:2159490-2213762	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv596908	chr5:2186956-2254295	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:2208000-2215200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:2212400-2214000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:2213600-2214200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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