Variant report

Variant	rs12656460
Chromosome Location	chr5:8748627-8748628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:63747394..63747975-chr5:8748090..8749028,2	MCF-7	breast:

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1006621	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10434664	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10434665	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11738186	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11744220	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11746481	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11747635	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11748240	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12652272	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12652719	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12658754	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12659178	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13157524	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13159760	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13159767	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13168338	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13170223	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13172527	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13173721	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13178537	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13185344	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13185822	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13186951	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13187297	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501331	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1501332	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1501335	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1501336	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1501337	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1501338	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1505027	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1505029	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1604316	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1604317	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16881182	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16881184	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16881272	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16881280	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16881283	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16881286	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16881288	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16881291	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16881298	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17224123	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17289985	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17290055	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1875982	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1875983	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1875984	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2135061	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2188316	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2188317	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2213963	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2388351	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2388352	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2388353	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28610552	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34195584	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34357874	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34489159	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34750998	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34929887	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34963449	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34979959	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35547447	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35559031	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35585331	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35839839	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35937730	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4702571	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4702572	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4702573	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4702574	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4702575	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4702576	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4702577	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4702579	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56278683	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60877552	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61258250	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61490259	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62355892	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62355893	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62355897	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62355932	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62355933	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66558925	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6882019	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6883332	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6885243	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6886555	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7701508	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7708927	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7718718	0.87[AMR][1000 genomes]
rs7719015	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7719888	0.88[AMR][1000 genomes]
rs7727009	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7727663	0.83[EUR][1000 genomes]
rs7727674	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:69 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv436977	chr5:8699765-8749282	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv461931	chr5:8700487-8770185	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv597030	chr5:8700487-8770185	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv10663	chr5:8700828-8749424	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763864	chr5:8701366-8749776	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1019577	chr5:8701920-8749764	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2757103	chr5:8701920-8790546	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2759321	chr5:8701920-8790546	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027237	chr5:8702102-8749764	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1027787	chr5:8702228-8749764	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1794920	chr5:8702269-8748631	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv436978	chr5:8702372-8749282	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv436979	chr5:8702372-8749282	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv880842	chr5:8702372-8753733	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv597034	chr5:8702372-8757690	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv881507	chr5:8702372-8757690	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	esv1798306	chr5:8702381-8750841	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1022347	chr5:8702522-8749719	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1032517	chr5:8702522-8749764	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1027474	chr5:8702522-8751894	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv1796265	chr5:8702827-8748831	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1797215	chr5:8702827-8748831	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv12367	chr5:8702908-8748681	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv1796136	chr5:8703025-8749139	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv1802325	chr5:8703027-8748631	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1019724	chr5:8703045-8749764	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1029834	chr5:8703045-8751894	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv1792540	chr5:8703085-8748627	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1792741	chr5:8703085-8748627	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1795165	chr5:8703085-8748627	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1797089	chr5:8703085-8748627	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv1799106	chr5:8703085-8748627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1802644	chr5:8703085-8748627	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1803954	chr5:8703085-8748627	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1804007	chr5:8703085-8748627	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv597038	chr5:8703085-8753733	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv597039	chr5:8703085-8757690	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
38	nsv597040	chr5:8703085-8766069	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	esv1792062	chr5:8703148-8748627	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv1795176	chr5:8703148-8748627	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	esv1796738	chr5:8703148-8748627	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
42	esv1798544	chr5:8703148-8748627	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1801258	chr5:8703148-8748627	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv597048	chr5:8703148-8748627	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv597049	chr5:8703148-8752756	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv1797366	chr5:8703148-8757690	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	nsv461937	chr5:8703148-8757690	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	nsv461938	chr5:8703148-8757690	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	nsv461940	chr5:8703148-8757690	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
50	nsv597050	chr5:8703148-8757690	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8748600-8751000	Enhancers	Dnd41	blood

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