Variant report

Variant	rs12657123
Chromosome Location	chr5:103907272-103907273
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10052804	0.93[ASN][1000 genomes]
rs10053368	0.94[ASN][1000 genomes]
rs10053371	0.90[ASN][1000 genomes]
rs10054977	0.94[ASN][1000 genomes]
rs10057459	0.93[ASN][1000 genomes]
rs10057469	0.93[ASN][1000 genomes]
rs10059133	0.94[ASN][1000 genomes]
rs10059643	0.92[ASN][1000 genomes]
rs10059898	0.94[ASN][1000 genomes]
rs10066853	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10071115	0.95[ASN][1000 genomes]
rs10072579	0.94[ASN][1000 genomes]
rs10072849	0.94[ASN][1000 genomes]
rs10073929	0.94[ASN][1000 genomes]
rs10078807	0.95[ASN][1000 genomes]
rs10078969	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10477834	0.94[ASN][1000 genomes]
rs10477835	0.94[ASN][1000 genomes]
rs10479296	0.94[ASN][1000 genomes]
rs10479297	0.94[ASN][1000 genomes]
rs12520629	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12651813	0.94[ASN][1000 genomes]
rs12658276	0.94[ASN][1000 genomes]
rs13164188	0.94[ASN][1000 genomes]
rs13177365	0.94[ASN][1000 genomes]
rs1363096	0.92[ASN][1000 genomes]
rs1363097	0.92[ASN][1000 genomes]
rs1363098	0.92[ASN][1000 genomes]
rs1363102	0.92[ASN][1000 genomes]
rs1363103	0.94[ASN][1000 genomes]
rs1363104	0.92[ASN][1000 genomes]
rs1363105	0.94[ASN][1000 genomes]
rs1421660	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1421665	0.94[ASN][1000 genomes]
rs1421666	1.00[ASN][1000 genomes]
rs1421667	1.00[ASN][1000 genomes]
rs1582419	0.91[ASN][1000 genomes]
rs17156671	1.00[ASN][1000 genomes]
rs2012695	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2018142	0.81[ASN][1000 genomes]
rs2032790	1.00[ASN][1000 genomes]
rs2193933	0.93[ASN][1000 genomes]
rs2403284	1.00[ASN][1000 genomes]
rs35207728	0.94[ASN][1000 genomes]
rs35792668	0.94[ASN][1000 genomes]
rs4295362	0.99[ASN][1000 genomes]
rs4345293	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4432860	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4515268	0.92[ASN][1000 genomes]
rs4703306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs4703307	0.88[ASN][1000 genomes]
rs62362442	0.82[ASN][1000 genomes]
rs62362443	0.94[ASN][1000 genomes]
rs62362459	0.94[ASN][1000 genomes]
rs6865511	0.99[ASN][1000 genomes]
rs6869862	0.93[ASN][1000 genomes]
rs6870957	0.91[ASN][1000 genomes]
rs6890980	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6892093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs768905	1.00[ASN][1000 genomes]
rs7703746	0.93[ASN][1000 genomes]
rs7710489	0.94[ASN][1000 genomes]
rs7723509	0.94[ASN][1000 genomes]
rs7731266	0.92[ASN][1000 genomes]
rs959857	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv531969	chr5:103482070-104249804	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv432793	chr5:103693025-104115101	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv428121	chr5:103777677-104094645	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1022638	chr5:103789145-104682389	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv882537	chr5:103833944-103925210	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv830433	chr5:103862974-103983492	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv462337	chr5:103906144-103971846	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv471029	chr5:103906144-103971846	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv599215	chr5:103906144-103971846	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103906200-103908800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:103906600-103907400	Enhancers	Pancreatic Islets	Pancreatic Islet

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