Variant report

Variant	rs12658120
Chromosome Location	chr5:167620396-167620397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10516045	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3756603	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs4976583	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57478688	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61392317	1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167592400-167626000	Weak transcription	HSMM	muscle
2	chr5:167606600-167626800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:167608600-167631800	Weak transcription	NH-A	brain
4	chr5:167614400-167620400	Weak transcription	HSMMtube	muscle
5	chr5:167614600-167620400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:167614600-167620600	Weak transcription	Fetal Brain Female	brain
7	chr5:167614800-167620600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr5:167615800-167633800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167615800-167646600	Weak transcription	Fetal Heart	heart
10	chr5:167616200-167620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:167617000-167628200	Strong transcription	NHEK	skin
12	chr5:167618800-167621800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167618800-167622000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:167618800-167624000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167618800-167625000	Weak transcription	Right Ventricle	heart
16	chr5:167619000-167620800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167619200-167646600	Weak transcription	NHDF-Ad	bronchial
18	chr5:167619400-167621000	Weak transcription	Left Ventricle	heart
19	chr5:167619400-167622200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr5:167619800-167620800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:167619800-167621400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:167619800-167621400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:167619800-167622800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr5:167620000-167621800	Enhancers	Brain Germinal Matrix	brain

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