Variant report

Variant	rs12658126
Chromosome Location	chr5:126622380-126622381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12653273	0.93[ASN][1000 genomes]
rs12655913	0.89[EUR][1000 genomes]
rs12659381	0.93[ASN][1000 genomes]
rs12659424	0.93[ASN][1000 genomes]
rs17839701	0.93[ASN][1000 genomes]
rs3812058	1.00[ASN][1000 genomes]
rs3812059	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638823	0.93[ASN][1000 genomes]
rs57164852	0.93[ASN][1000 genomes]
rs58011598	0.93[ASN][1000 genomes]
rs58047377	0.93[ASN][1000 genomes]
rs58727001	0.93[ASN][1000 genomes]
rs59871357	0.93[ASN][1000 genomes]
rs60138783	0.93[ASN][1000 genomes]
rs73785546	0.93[ASN][1000 genomes]
rs73785547	0.93[ASN][1000 genomes]
rs73785555	0.93[ASN][1000 genomes]
rs73785556	0.93[ASN][1000 genomes]
rs73785558	0.93[ASN][1000 genomes]
rs7723558	0.93[ASN][1000 genomes]
rs7728190	0.93[ASN][1000 genomes]
rs960927	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126620600-126623200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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