Variant report

Variant	rs12658163
Chromosome Location	chr5:42671876-42671877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10041130	0.89[ASN][1000 genomes]
rs10941583	0.95[ASN][1000 genomes]
rs12652476	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12654861	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12656017	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12658099	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1423655	0.86[ASN][1000 genomes]
rs16872680	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16872694	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16872756	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16872762	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872777	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872791	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16872824	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872825	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872830	1.00[EUR][1000 genomes]
rs16872832	0.80[AMR][1000 genomes]
rs17839373	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17839374	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs230808	0.86[ASN][1000 genomes]
rs230809	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230811	0.83[ASN][1000 genomes]
rs2548719	0.82[ASN][1000 genomes]
rs28918068	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28919894	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28919901	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28919903	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28943887	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28943888	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2910854	0.86[ASN][1000 genomes]
rs2910860	0.86[ASN][1000 genomes]
rs2910863	0.86[ASN][1000 genomes]
rs2910866	0.86[ASN][1000 genomes]
rs2910879	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972752	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972768	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972769	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972782	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2972995	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2973004	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2973008	0.82[ASN][1000 genomes]
rs2973009	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2973016	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2973019	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2973030	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34194895	0.80[AMR][1000 genomes]
rs34319505	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34382565	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35389780	1.00[EUR][1000 genomes]
rs35436563	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35604733	0.92[ASN][1000 genomes]
rs4146624	0.83[ASN][1000 genomes]
rs4376276	0.94[ASN][1000 genomes]
rs4637559	0.94[ASN][1000 genomes]
rs6182	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6184	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1031160	chr5:42610090-42843255	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1019696	chr5:42610090-42844191	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv597886	chr5:42610409-42854408	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1029933	chr5:42611976-42833385	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv537735	chr5:42611976-42833385	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1019648	chr5:42616487-42696943	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv537736	chr5:42616487-42696943	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42669000-42673000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:42670800-42682200	Weak transcription	Fetal Lung	lung
3	chr5:42671200-42672600	Strong transcription	Liver	Liver
4	chr5:42671800-42675800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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