Variant report

Variant	rs12658243
Chromosome Location	chr5:57227543-57227544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12654708	1.00[EUR][1000 genomes]
rs12658859	1.00[EUR][1000 genomes]
rs1454905	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147092	1.00[EUR][1000 genomes]
rs4147093	1.00[EUR][1000 genomes]
rs4256311	1.00[EUR][1000 genomes]
rs59299071	0.86[ASN][1000 genomes]
rs7714975	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57225000-57228200	Enhancers	Brain Germinal Matrix	brain
2	chr5:57225000-57228800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:57226600-57227600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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