Variant report

Variant	rs12658760
Chromosome Location	chr5:107735037-107735038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107721991..107723529-chr5:107734221..107736637,2	MCF-7	breast:
2	chr5:107716808..107719663-chr5:107732645..107735732,3	K562	blood:

Variant related genes	Relation type
ENSG00000145743	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10515388	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12652237	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12652460	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12652675	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12653689	0.86[EUR][1000 genomes]
rs12656739	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12658885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12659437	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17386492	0.80[EUR][1000 genomes]
rs17387645	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17388244	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17452357	0.87[EUR][1000 genomes]
rs17452992	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2052463	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2193972	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34924629	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55755463	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56855707	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57268633	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58131807	0.87[EUR][1000 genomes]
rs58212758	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58844678	0.82[EUR][1000 genomes]
rs60731389	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61135906	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6880005	0.80[EUR][1000 genomes]
rs72791270	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7703032	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7703347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7704811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711717	0.82[EUR][1000 genomes]
rs7724245	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7733036	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv2755544	chr5:107614101-107748101	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107734400-107735200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr5:107735000-107745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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