Variant report

Variant	rs12660617
Chromosome Location	chr6:33604606-33604607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33603324..33605214-chr6:33605377..33607191,2	MCF-7	breast:
2	chr6:33603701..33605977-chr6:33619846..33621457,2	K562	blood:
3	chr6:33600933..33606541-chr6:33607486..33611147,7	K562	blood:
4	chr6:33602056..33605977-chr6:33617879..33621457,3	K562	blood:
5	chr6:33602810..33605729-chr6:33607215..33609407,2	MCF-7	breast:
6	chr6:33604565..33606650-chr6:33635359..33638294,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10947415	1.00[ASN][1000 genomes]
rs11755257	1.00[ASN][1000 genomes]
rs11758330	1.00[ASN][1000 genomes]
rs12200154	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
3	esv1817557	chr6:33584788-33614127	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	esv1813933	chr6:33587443-33614127	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12660617	CUTA	cis	brain	BrainEAC

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33602200-33605800	Enhancers	Primary T cells fromperipheralblood	blood
2	chr6:33602200-33608200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:33602400-33604800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:33602400-33605200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:33602400-33605200	Strong transcription	NHEK	skin
6	chr6:33602400-33607400	Weak transcription	Thymus	Thymus
7	chr6:33602400-33607600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:33602400-33607600	Weak transcription	Colonic Mucosa	Colon
9	chr6:33602400-33608200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:33602400-33609000	Enhancers	Stomach Mucosa	stomach
11	chr6:33602400-33609400	Weak transcription	GM12878-XiMat	blood
12	chr6:33602400-33609800	Weak transcription	K562	blood
13	chr6:33602400-33617800	Weak transcription	NHLF	lung
14	chr6:33602400-33622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:33602400-33636400	Weak transcription	HSMMtube	muscle
16	chr6:33602600-33605000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:33602600-33605800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:33602600-33605800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:33602600-33606000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:33602600-33606600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:33602600-33608400	Weak transcription	Esophagus	oesophagus
22	chr6:33602600-33608600	Weak transcription	Dnd41	blood
23	chr6:33602600-33609800	Weak transcription	Fetal Lung	lung
24	chr6:33602600-33610600	Weak transcription	Right Atrium	heart
25	chr6:33602600-33614800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:33602600-33619200	Weak transcription	NHDF-Ad	bronchial
27	chr6:33602600-33623400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr6:33602600-33624400	Weak transcription	Small Intestine	intestine
29	chr6:33602600-33625400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:33602600-33625800	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:33602600-33631600	Weak transcription	Osteobl	bone
32	chr6:33602800-33604800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:33602800-33606000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:33602800-33606600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:33602800-33607600	Weak transcription	HMEC	breast
36	chr6:33602800-33607800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:33602800-33608400	Weak transcription	Right Ventricle	heart
38	chr6:33602800-33608800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr6:33602800-33613400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:33602800-33624400	Weak transcription	Pancreas	Pancrea
41	chr6:33603000-33604800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:33603000-33606000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:33603000-33606000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:33603000-33624000	Weak transcription	HSMM	muscle
45	chr6:33603000-33628600	Weak transcription	Primary B cells from cord blood	blood
46	chr6:33603200-33605000	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr6:33603200-33605200	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr6:33603200-33619600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:33603400-33604800	Weak transcription	Hela-S3	cervix
50	chr6:33603400-33606000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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