Variant report

Variant	rs12661022
Chromosome Location	chr6:54669411-54669412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs62412576	0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62412577	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62412580	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62412581	0.81[ASN][1000 genomes]
rs62412597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62412600	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62412603	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73430625	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54667800-54670800	Enhancers	Fetal Intestine Small	intestine
2	chr6:54668200-54670200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:54668200-54670400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:54668200-54670400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:54668400-54670000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:54668400-54670000	Weak transcription	Hela-S3	cervix
7	chr6:54668400-54670200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:54668800-54670000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:54668800-54670000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:54668800-54670200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:54668800-54670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:54668800-54670800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:54669000-54671200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:54669200-54669600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:54669400-54670400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:54669400-54670600	Enhancers	Fetal Heart	heart
17	chr6:54669400-54670800	Enhancers	HSMMtube	muscle
18	chr6:54669400-54670800	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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