Variant report

Variant	rs12661297
Chromosome Location	chr6:144087309-144087310
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144080993..144084686-chr6:144086462..144088347,3	K562	blood:
2	chr6:144085424..144087844-chr6:144169297..144171955,2	K562	blood:
3	chr6:144059361..144061589-chr6:144086524..144088312,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10080355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12198422	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2328515	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs55663530	0.81[ASN][1000 genomes]
rs55924741	0.81[ASN][1000 genomes]
rs6931825	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs9390132	0.84[ASN][1000 genomes]
rs960710	0.82[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5513	chr6:144068006-144102028	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144067600-144087400	Weak transcription	NH-A	brain
2	chr6:144067800-144095400	Weak transcription	NHLF	lung
3	chr6:144067800-144122000	Weak transcription	Colonic Mucosa	Colon
4	chr6:144069400-144097800	Weak transcription	Gastric	stomach
5	chr6:144069600-144093200	Weak transcription	Stomach Mucosa	stomach
6	chr6:144070200-144122000	Weak transcription	Small Intestine	intestine
7	chr6:144070800-144106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:144072600-144095000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:144072600-144106400	Weak transcription	HMEC	breast
10	chr6:144074200-144113200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:144077200-144087600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:144077200-144088800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:144077200-144093600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:144077200-144095400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:144077400-144095000	Weak transcription	NHEK	skin
16	chr6:144077800-144122000	Weak transcription	Fetal Brain Male	brain
17	chr6:144079000-144092800	Weak transcription	Fetal Kidney	kidney
18	chr6:144079000-144099600	Weak transcription	K562	blood
19	chr6:144079200-144093000	Weak transcription	HSMM	muscle
20	chr6:144079200-144095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:144080600-144095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:144080600-144101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:144080600-144122000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr6:144081200-144089400	Strong transcription	Fetal Muscle Trunk	muscle
25	chr6:144081200-144096400	Weak transcription	Brain Angular Gyrus	brain
26	chr6:144081400-144089400	Weak transcription	Osteobl	bone
27	chr6:144081600-144089200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:144081800-144095200	Weak transcription	Psoas Muscle	Psoas
29	chr6:144081800-144097600	Weak transcription	Esophagus	oesophagus
30	chr6:144083000-144088200	Weak transcription	Fetal Lung	lung
31	chr6:144083600-144128600	Weak transcription	Hela-S3	cervix
32	chr6:144083800-144098600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:144084600-144087800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:144084600-144088000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:144084600-144088600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:144084600-144091600	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:144084800-144087800	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:144084800-144090800	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:144084800-144091400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:144084800-144092000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:144085000-144087400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:144085000-144113800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:144085200-144088000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:144085200-144088000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr6:144085200-144088000	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:144085200-144088000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:144085200-144089400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:144085200-144089800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:144085200-144090000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:144085200-144090000	Strong transcription	Fetal Muscle Leg	muscle

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