Variant report

Variant	rs12661800
Chromosome Location	chr6:119572171-119572172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119571128..119573989-chr6:119670611..119672762,2	MCF-7	breast:
2	chr6:119571388..119574605-chr6:119574866..119578406,5	K562	blood:
3	chr6:119571388..119573647-chr6:119575299..119577193,2	K562	blood:
4	chr6:119561243..119562777-chr6:119571538..119573214,2	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12662787	1.00[AFR][1000 genomes]
rs12664039	1.00[AFR][1000 genomes]
rs12665340	1.00[EUR][1000 genomes]
rs2267671	0.90[AMR][1000 genomes]
rs4946415	1.00[AFR][1000 genomes]
rs72497715	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:119558800-119572200	Weak transcription	Right Ventricle	heart
3	chr6:119558800-119572800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:119558800-119573600	Weak transcription	Lung	lung
5	chr6:119558800-119575200	Weak transcription	Esophagus	oesophagus
6	chr6:119558800-119576400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:119558800-119576400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:119558800-119576400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:119558800-119576400	Weak transcription	Dnd41	blood
10	chr6:119558800-119576600	Weak transcription	Spleen	Spleen
11	chr6:119558800-119576800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:119558800-119577600	Weak transcription	Aorta	Aorta
13	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:119558800-119578400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:119558800-119578600	Weak transcription	Fetal Thymus	thymus
17	chr6:119558800-119582200	Weak transcription	Colonic Mucosa	Colon
18	chr6:119558800-119589800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:119558800-119590200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:119558800-119590400	Weak transcription	GM12878-XiMat	blood
21	chr6:119558800-119602000	Weak transcription	Gastric	stomach
22	chr6:119562200-119579400	Weak transcription	NHEK	skin
23	chr6:119562600-119580000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:119562600-119580000	Weak transcription	Small Intestine	intestine
25	chr6:119562800-119582200	Weak transcription	Pancreas	Pancrea
26	chr6:119562800-119583000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:119562800-119590200	Weak transcription	Fetal Stomach	stomach
28	chr6:119562800-119590800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:119563400-119573800	Weak transcription	Ovary	ovary
30	chr6:119563400-119588000	Weak transcription	Fetal Kidney	kidney
31	chr6:119563400-119590200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:119565600-119572200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:119565800-119572200	Strong transcription	Liver	Liver
34	chr6:119566800-119582600	Weak transcription	Fetal Lung	lung
35	chr6:119567400-119572400	Strong transcription	Primary hematopoietic stem cells	blood
36	chr6:119568600-119592600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr6:119568800-119577800	Strong transcription	HepG2	liver
38	chr6:119569000-119581600	Weak transcription	NHDF-Ad	bronchial
39	chr6:119569000-119583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:119569200-119576000	Weak transcription	Primary T cells from cord blood	blood
41	chr6:119569200-119576600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:119569200-119589800	Weak transcription	Fetal Intestine Large	intestine
43	chr6:119569200-119590000	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr6:119569200-119590400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr6:119569200-119591600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr6:119569200-119591600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr6:119569400-119572400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr6:119569400-119581400	Weak transcription	Colon Smooth Muscle	Colon
49	chr6:119569400-119590000	Weak transcription	Placenta	Placenta
50	chr6:119569400-119590200	Weak transcription	Left Ventricle	heart

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