Variant report

Variant	rs12663423
Chromosome Location	chr6:166636119-166636120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2024981	0.87[EUR][1000 genomes]
rs2024982	0.87[EUR][1000 genomes]
rs4710028	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62441562	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7738781	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9356441	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029993	chr6:166621852-166695791	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538537	chr6:166621852-166695791	Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12663423	PDE10A	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166633000-166636400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:166634200-166636600	ZNF genes & repeats	Fetal Thymus	thymus
3	chr6:166635400-166636400	Enhancers	Spleen	Spleen
4	chr6:166635600-166637000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:166636000-166636200	Active TSS	Stomach Mucosa	stomach
6	chr6:166636000-166636200	Bivalent Enhancer	K562	blood
7	chr6:166636000-166636600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:166636000-166636600	ZNF genes & repeats	Dnd41	blood
9	chr6:166636000-166637400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:166636000-166637600	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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