Variant report

Variant	rs12663919
Chromosome Location	chr6:28459007-28459008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28457050..28459909-chr6:28532442..28533968,2	K562	blood:
2	chr6:28458124..28459784-chr6:28640264..28642062,2	K562	blood:
3	chr6:28456446..28459153-chr6:28555326..28557057,2	MCF-7	breast:
4	chr6:28457438..28459900-chr6:28562762..28564476,2	K562	blood:
5	chr6:28184719..28186760-chr6:28457419..28459173,2	K562	blood:
6	chr6:28457551..28459368-chr6:28582863..28585503,2	K562	blood:
7	chr6:28457441..28459439-chr6:28472256..28474388,2	K562	blood:
8	chr6:28456855..28459742-chr6:28553402..28555898,3	MCF-7	breast:
9	chr6:28364266..28370257-chr6:28453674..28463075,14	K562	blood:
10	chr6:28457939..28459727-chr6:28472888..28474894,2	K562	blood:
11	chr6:28457372..28460097-chr6:28460579..28463613,3	MCF-7	breast:
12	chr6:28458817..28460819-chr6:28647431..28649482,3	K562	blood:
13	chr6:28364227..28369783-chr6:28455559..28460332,7	K562	blood:
14	chr6:28457570..28459445-chr6:28579762..28581303,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000176933	Chromatin interaction
ENSG00000158691	Chromatin interaction
ENSG00000246350	Chromatin interaction
ENSG00000232040	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28382600	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28456400-28459400	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:28456400-28460200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:28458400-28459200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:28458400-28459200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
5	chr6:28458400-28459600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:28458600-28459800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:28458800-28459400	Enhancers	Fetal Thymus	thymus
8	chr6:28458800-28459600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:28458800-28459800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:28458800-28459800	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:28458800-28459800	Active TSS	K562	blood
12	chr6:28458800-28465600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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