Variant report

Variant	rs12667286
Chromosome Location	chr7:80770952-80770953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs167862	0.92[ASN][1000 genomes]
rs327665	0.87[ASN][1000 genomes]
rs327679	0.81[ASN][1000 genomes]
rs327680	0.81[ASN][1000 genomes]
rs327681	0.81[ASN][1000 genomes]
rs327698	0.81[ASN][1000 genomes]
rs3914076	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4107625	0.80[ASN][1000 genomes]
rs4524735	0.92[ASN][1000 genomes]
rs477191	0.82[ASN][1000 genomes]
rs567272	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv888556	chr7:80695828-80797794	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv831044	chr7:80721773-80918591	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80763200-80780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:80768000-80771000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:80768200-80771000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:80768200-80771000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:80768800-80771000	Enhancers	Primary hematopoietic stem cells	blood
6	chr7:80769000-80771400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:80770200-80771000	Enhancers	Fetal Muscle Leg	muscle
8	chr7:80770800-80771200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr7:80770800-80771400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:80770800-80773200	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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