Variant report

Variant	rs12667358
Chromosome Location	chr7:64866075-64866076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64864766..64867610-chr7:64868156..64870680,2	MCF-7	breast:

Extended variants
information (count: 322 )
Associated
traits (count: 44 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10244630	0.88[EUR][1000 genomes]
rs10263834	0.88[EUR][1000 genomes]
rs10267741	0.88[EUR][1000 genomes]
rs10277384	0.88[EUR][1000 genomes]
rs10949982	0.85[AMR][1000 genomes]
rs10949983	0.81[AMR][1000 genomes]
rs10949984	0.85[EUR][1000 genomes]
rs10949986	0.88[EUR][1000 genomes]
rs10949992	0.91[YRI][hapmap]
rs10949993	0.91[YRI][hapmap]
rs10949996	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11761184	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11761772	0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11764327	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11768131	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11772443	0.85[EUR][1000 genomes]
rs11772543	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11773124	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11773286	0.83[AMR][1000 genomes]
rs11977584	0.85[EUR][1000 genomes]
rs12333375	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12534769	0.84[AMR][1000 genomes]
rs12535182	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12536316	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12536326	0.82[EUR][1000 genomes]
rs12538518	0.83[EUR][1000 genomes]
rs12539044	0.83[EUR][1000 genomes]
rs12539070	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12666743	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12668784	0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12669746	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12670926	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12673478	0.87[EUR][1000 genomes]
rs13234392	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13235187	0.88[EUR][1000 genomes]
rs13239089	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13241147	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1431260	0.88[ASN][1000 genomes]
rs1543851	0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1808614	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1812771	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1964363	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2419786	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2419789	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2672007	0.81[EUR][1000 genomes]
rs2900982	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2943352	0.87[EUR][1000 genomes]
rs35021752	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35070250	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35417167	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35512631	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35888355	0.81[EUR][1000 genomes]
rs3857677	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4386866	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4717246	0.88[EUR][1000 genomes]
rs4717247	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4717251	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4717253	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4717254	0.87[AMR][1000 genomes]
rs4717255	0.87[AMR][1000 genomes]
rs4717256	0.87[AMR][1000 genomes]
rs4718208	0.85[AMR][1000 genomes]
rs4718210	0.85[AMR][1000 genomes]
rs4718211	0.84[AMR][1000 genomes]
rs4718218	0.87[EUR][1000 genomes]
rs4718219	0.87[EUR][1000 genomes]
rs4718220	0.88[EUR][1000 genomes]
rs4718221	0.88[EUR][1000 genomes]
rs4718222	0.88[EUR][1000 genomes]
rs4718224	0.88[EUR][1000 genomes]
rs4718225	0.88[EUR][1000 genomes]
rs4718226	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4718239	0.87[AMR][1000 genomes]
rs517258	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs532409	0.85[EUR][1000 genomes]
rs537150	0.85[EUR][1000 genomes]
rs55891307	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56283995	0.88[EUR][1000 genomes]
rs58643803	0.84[AMR][1000 genomes]
rs590455	0.83[EUR][1000 genomes]
rs608809	0.85[EUR][1000 genomes]
rs6460232	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs658606	0.85[EUR][1000 genomes]
rs66513022	0.87[AMR][1000 genomes]
rs666389	0.85[EUR][1000 genomes]
rs67775311	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6944245	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6948240	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6948955	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6954158	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6954951	0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6956631	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6958237	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6963248	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6964167	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6965832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6971058	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6971506	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6973096	0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6973539	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6974762	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6974876	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6978330	0.90[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6978350	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71562992	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7780291	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7788644	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7796833	0.81[AMR][1000 genomes]
rs7806475	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7811535	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:212 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1033517	chr7:64443052-64942418	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv538893	chr7:64443052-64942418	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv1019089	chr7:64456197-64874187	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	nsv1023699	chr7:64456197-64942418	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	nsv517778	chr7:64462326-65326821	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv917231	chr7:64478253-65300317	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	esv34341	chr7:64478386-65012082	Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	esv2752166	chr7:64478386-65208605	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	nsv1029796	chr7:64494934-65302696	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv916005	chr7:64499811-65012082	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
13	nsv533081	chr7:64499945-65208605	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	esv3339156	chr7:64510176-65349050	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
15	nsv888287	chr7:64537992-64990806	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
16	esv2758117	chr7:64551274-65208605	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	esv2759534	chr7:64551274-65373851	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
18	nsv427788	chr7:64551274-65390424	Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
19	esv2752167	chr7:64557394-65012082	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	esv2752168	chr7:64557394-65012082	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
21	esv2752169	chr7:64557394-65012082	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv429768	chr7:64557394-65012082	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	nsv1021867	chr7:64565573-65012082	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
24	nsv1032570	chr7:64565573-65184339	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
25	nsv1029343	chr7:64566957-65208605	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
26	nsv538894	chr7:64566957-65208605	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
27	nsv869856	chr7:64567013-65196403	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
28	nsv607316	chr7:64582849-65208605	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	esv2761084	chr7:64594065-64967767	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	esv2764020	chr7:64594065-65351820	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
31	nsv1032227	chr7:64594329-64917141	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
32	nsv1016806	chr7:64594329-64941887	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
33	nsv1015575	chr7:64594329-64947974	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv1021106	chr7:64594329-64951818	Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	nsv1016496	chr7:64594329-64960445	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
36	nsv1016392	chr7:64594329-64967755	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
37	nsv1020647	chr7:64594329-64997960	Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
38	nsv1019148	chr7:64594329-65002671	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv1017973	chr7:64594329-65012082	Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv1018590	chr7:64594329-65012082	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv1021410	chr7:64594329-65012082	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv1034505	chr7:64594329-65012082	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
43	nsv1029844	chr7:64594329-65094953	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
44	nsv1017365	chr7:64594329-65106792	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
45	nsv1032262	chr7:64594329-65161364	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
46	nsv1023425	chr7:64594329-65162170	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
47	nsv1015680	chr7:64594329-65183496	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
48	nsv1017379	chr7:64609628-64927898	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
49	nsv538895	chr7:64609628-64927898	Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
50	nsv1033736	chr7:64609828-64927759	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:44)

SNP	Gene	Cis/trans	Tissue	Source
rs12667358	RP11-797H7.3	cis	Thyroid	GTEx
rs12667358	RP11-667F9.1	cis	Adipose Subcutaneous	GTEx
rs12667358	RP11-460N20.5	cis	Esophagus Muscularis	GTEx
rs12667358	CCT6P3	cis	Nerve Tibial	GTEx
rs12667358	CCT6P3	cis	Adipose Subcutaneous	GTEx
rs12667358	CCT6P3	cis	Whole Blood	GTEx
rs12667358	RP11-667F9.1	cis	Artery Aorta	GTEx
rs12667358	RP11-460N20.4	cis	Adipose Subcutaneous	GTEx
rs12667358	AC104057.1	cis	Adipose Subcutaneous	GTEx
rs12667358	RP11-797H7.3	cis	Artery Aorta	GTEx
rs12667358	INTS4L1	cis	Skin Sun Exposed Lower leg	GTEx
rs12667358	SEPHS1P1	cis	Nerve Tibial	GTEx
rs12667358	INTS4L1	cis	Adipose Subcutaneous	GTEx
rs12667358	INTS4L1	cis	Esophagus Muscularis	GTEx
rs12667358	INTS4L1	cis	Stomach	GTEx
rs12667358	AC104057.1	cis	Esophagus Muscularis	GTEx
rs12667358	RP11-460N20.5	cis	Stomach	GTEx
rs12667358	ERV3-1	cis	Artery Aorta	GTEx
rs12667358	RP11-460N20.4	cis	Artery Tibial	GTEx
rs12667358	RP11-797H7.5	cis	lung	GTEx
rs12667358	RP11-667F9.1	cis	Nerve Tibial	GTEx
rs12667358	INTS4L1	cis	Nerve Tibial	GTEx
rs12667358	RP11-797H7.3	cis	Adipose Subcutaneous	GTEx
rs12667358	RP11-460N20.5	cis	Esophagus Mucosa	GTEx
rs12667358	RP11-460N20.5	cis	lung	GTEx
rs12667358	RP11-797H7.5	cis	Adipose Subcutaneous	GTEx
rs12667358	RP11-460N20.4	cis	lung	GTEx
rs12667358	ERV3	cis	multi-tissue	Pritchard
rs12667358	RP11-460N20.4	cis	Esophagus Muscularis	GTEx
rs12667358	RP11-797H7.5	cis	Thyroid	GTEx
rs12667358	CCT6P3	cis	Esophagus Mucosa	GTEx
rs12667358	RP11-460N20.5	cis	Whole Blood	GTEx
rs12667358	RP11-460N20.5	cis	Artery Aorta	GTEx
rs12667358	RP11-460N20.4	cis	Nerve Tibial	GTEx
rs12667358	RP11-460N20.4	cis	Esophagus Mucosa	GTEx
rs12667358	ZNF273	cis	lung	GTEx
rs12667358	INTS4L1	cis	Thyroid	GTEx
rs12667358	RP11-460N20.5	cis	Artery Tibial	GTEx
rs12667358	RP11-797H7.3	cis	Skin Sun Exposed Lower leg	GTEx
rs12667358	RP11-460N20.5	cis	Adipose Subcutaneous	GTEx
rs12667358	RP11-460N20.5	cis	Thyroid	GTEx
rs12667358	RP11-460N20.5	cis	Nerve Tibial	GTEx
rs12667358	RP11-797H7.3	cis	Nerve Tibial	GTEx
rs12667358	CCT6P3	cis	lung	GTEx

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64840200-64866200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr7:64841000-64866600	Weak transcription	Colon Smooth Muscle	Colon
3	chr7:64844600-64866200	Weak transcription	NHLF	lung
4	chr7:64844800-64866800	Weak transcription	Pancreas	Pancrea
5	chr7:64844800-64867400	Weak transcription	Brain Anterior Caudate	brain
6	chr7:64846800-64867600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:64847800-64869000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:64849400-64868400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:64850000-64867400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:64850600-64866800	Weak transcription	Small Intestine	intestine
11	chr7:64850800-64867800	Weak transcription	Stomach Mucosa	stomach
12	chr7:64854400-64866600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:64856200-64867600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:64856800-64866800	Weak transcription	Fetal Intestine Small	intestine
15	chr7:64858000-64866800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:64858000-64866800	Weak transcription	Fetal Stomach	stomach
17	chr7:64858200-64867000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr7:64859200-64867000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:64859600-64866800	ZNF genes & repeats	Dnd41	blood
20	chr7:64860000-64867200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:64860200-64866400	Strong transcription	HSMM	muscle
22	chr7:64860200-64867000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr7:64860800-64868800	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:64861000-64866200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:64861200-64867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:64861800-64866800	Weak transcription	Thymus	Thymus
27	chr7:64862000-64866200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
28	chr7:64862400-64866200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
29	chr7:64862400-64866200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:64862400-64866600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:64862600-64866200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr7:64862600-64866800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr7:64862600-64866800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr7:64862800-64866200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:64863000-64866800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:64863000-64866800	Weak transcription	Gastric	stomach
37	chr7:64863000-64866800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:64863000-64868200	Weak transcription	Ovary	ovary
39	chr7:64863400-64868000	Weak transcription	HMEC	breast
40	chr7:64863400-64868800	Weak transcription	Fetal Brain Male	brain
41	chr7:64863600-64866400	Weak transcription	K562	blood
42	chr7:64863600-64866600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr7:64863800-64866600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:64864200-64866200	Strong transcription	HepG2	liver
45	chr7:64864200-64866400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr7:64864200-64866600	Weak transcription	Hela-S3	cervix
47	chr7:64864200-64867000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:64864200-64867600	Weak transcription	Stomach Smooth Muscle	stomach
49	chr7:64864400-64866400	Strong transcription	Fetal Brain Female	brain
50	chr7:64864600-64866600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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