The 2.0 version of rSNPBase
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Variant report
Variant
rs12668142
Chromosome Location
chr7:147943707-147943708
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr7:147941125..147943957-chr7:147946275..147948707,2
K562
blood:
No data
No data
No data
No data
Extended variants information (count: 2 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:1)
rs_ID
r
2
[population]
rs10270307
1.00[CHB][hapmap]
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv428189
chr7:147885525-148051226
Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'
TF binding regionCpG islandChromatin interactive region
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links