Variant report

Variant	rs12668272
Chromosome Location	chr7:26651344-26651345
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10486467	0.91[ASN][1000 genomes]
rs10807833	0.87[ASN][1000 genomes]
rs11772342	0.87[ASN][1000 genomes]
rs12668185	0.98[ASN][1000 genomes]
rs12700753	0.91[ASN][1000 genomes]
rs1557989	0.91[ASN][1000 genomes]
rs1557990	0.91[ASN][1000 genomes]
rs1557991	0.91[ASN][1000 genomes]
rs1557992	0.91[ASN][1000 genomes]
rs1557993	0.91[ASN][1000 genomes]
rs17154093	0.91[ASN][1000 genomes]
rs2078118	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4722618	0.87[ASN][1000 genomes]
rs6950544	0.91[ASN][1000 genomes]
rs73292575	0.96[ASN][1000 genomes]
rs73292585	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26634400-26656600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:26648400-26652600	Weak transcription	Pancreas	Pancrea
3	chr7:26648600-26652600	Weak transcription	Right Atrium	heart
4	chr7:26649000-26652400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:26649400-26658200	Weak transcription	Spleen	Spleen
6	chr7:26650000-26655600	Weak transcription	Lung	lung
7	chr7:26650200-26652000	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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