Variant report

Variant	rs12668797
Chromosome Location	chr7:150499267-150499268
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150418208..150420407-chr7:150499249..150501046,2	K562	blood:
2	chr7:150490163..150495069-chr7:150496481..150500897,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABP1-3	chr7:150499144-150500920	NONHSAT124157

Variant related genes	Relation type
ENSG00000106565	Chromatin interaction
ENSG00000196329	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11546674	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs714884	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs741061	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs741062	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	esv3422811	chr7:150496544-150499392	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150495800-150499400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
2	chr7:150496200-150499600	Active TSS	Rectal Smooth Muscle	rectum
3	chr7:150498000-150499800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
4	chr7:150498400-150499400	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr7:150498400-150499600	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
6	chr7:150498400-150499600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr7:150498600-150499400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:150498600-150499600	Flanking Active TSS	Colonic Mucosa	Colon
9	chr7:150498600-150499600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr7:150498600-150500400	Weak transcription	Left Ventricle	heart
11	chr7:150498600-150500800	Weak transcription	Right Atrium	heart
12	chr7:150498800-150499400	Weak transcription	Small Intestine	intestine
13	chr7:150498800-150499600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr7:150498800-150499800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr7:150498800-150501600	Enhancers	Placenta	Placenta
16	chr7:150498800-150502800	Weak transcription	Gastric	stomach
17	chr7:150498800-150503000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:150499000-150499400	Bivalent/Poised TSS	Adipose Nuclei	Adipose
19	chr7:150499000-150499400	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr7:150499000-150499400	Weak transcription	Ovary	ovary
21	chr7:150499000-150499400	Weak transcription	Pancreas	Pancrea
22	chr7:150499000-150499400	Weak transcription	Right Ventricle	heart
23	chr7:150499000-150499400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:150499000-150499400	Enhancers	Spleen	Spleen
25	chr7:150499000-150499800	Bivalent Enhancer	Brain Substantia Nigra	brain
26	chr7:150499000-150499800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
27	chr7:150499200-150499400	Weak transcription	Esophagus	oesophagus
28	chr7:150499200-150499600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
29	chr7:150499200-150499800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:150499200-150499800	Bivalent Enhancer	Fetal Stomach	stomach
31	chr7:150499200-150500600	Enhancers	Stomach Mucosa	stomach
32	chr7:150499200-150501000	Genic enhancers	Fetal Intestine Large	intestine
33	chr7:150499200-150501200	Transcr. at gene 5' and 3'	Liver	Liver

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