Variant report

Variant	rs12671485
Chromosome Location	chr7:105472205-105472206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105469427..105472941-chr7:105514673..105518034,4	MCF-7	breast:
2	chr7:105470129..105472971-chr7:105479942..105482901,2	MCF-7	breast:
3	chr7:105471516..105474316-chr7:105479305..105481935,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146776	Chromatin interaction
ENSG00000128536	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12673105	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
3	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
4	chr7:105459200-105473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:105461600-105473200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr7:105462800-105473000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:105464200-105473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
9	chr7:105465800-105473200	Enhancers	NHDF-Ad	bronchial
10	chr7:105466200-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:105468200-105478200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:105468400-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
14	chr7:105468600-105473000	Enhancers	Fetal Lung	lung
15	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
16	chr7:105469600-105472600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:105469800-105472400	Enhancers	Osteobl	bone
18	chr7:105469800-105472600	Enhancers	Fetal Stomach	stomach
19	chr7:105469800-105472600	Enhancers	Rectal Smooth Muscle	rectum
20	chr7:105469800-105473800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr7:105470000-105472600	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:105470000-105472600	Enhancers	Fetal Heart	heart
23	chr7:105470000-105472600	Enhancers	HSMM	muscle
24	chr7:105470000-105473200	Enhancers	HUVEC	blood vessel
25	chr7:105470000-105473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:105470000-105473600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:105470000-105473800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr7:105470200-105472400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:105470200-105472400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:105470200-105472400	Enhancers	HSMMtube	muscle
31	chr7:105470200-105472600	Enhancers	HMEC	breast
32	chr7:105470200-105472800	Enhancers	NHEK	skin
33	chr7:105470200-105473200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:105470200-105473800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr7:105470400-105472400	Enhancers	Fetal Muscle Leg	muscle
36	chr7:105470400-105473800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr7:105470600-105472400	Enhancers	Placenta Amnion	Placenta Amnion
38	chr7:105470600-105472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:105470600-105472600	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr7:105470600-105472600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr7:105470600-105472600	Enhancers	Stomach Smooth Muscle	stomach
42	chr7:105470600-105473200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr7:105470600-105473400	Enhancers	Colon Smooth Muscle	Colon
44	chr7:105470800-105472400	Enhancers	Left Ventricle	heart
45	chr7:105470800-105473200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr7:105470800-105473200	Enhancers	NHLF	lung
47	chr7:105470800-105473600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr7:105471000-105472400	Enhancers	Adipose Nuclei	Adipose
49	chr7:105471000-105472600	Enhancers	Psoas Muscle	Psoas
50	chr7:105471200-105473000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links