Variant report

Variant	rs12672394
Chromosome Location	chr7:140013253-140013254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11761116	0.81[AMR][1000 genomes]
rs11769879	0.87[AMR][1000 genomes]
rs11772239	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12538711	0.84[AMR][1000 genomes]
rs12673119	0.95[ASN][1000 genomes]
rs12703730	0.84[AMR][1000 genomes]
rs12703742	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34473504	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35828749	0.96[ASN][1000 genomes]
rs4725679	0.85[ASN][1000 genomes]
rs4726766	0.99[ASN][1000 genomes]
rs6970317	0.87[ASN][1000 genomes]
rs7792748	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140004600-140015400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:140006000-140015400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:140008400-140014800	Weak transcription	Stomach Mucosa	stomach
4	chr7:140009400-140014800	Weak transcription	Colonic Mucosa	Colon
5	chr7:140009400-140015000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:140010400-140014400	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:140010800-140014400	Weak transcription	Ovary	ovary
8	chr7:140011000-140013800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:140011000-140014200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:140011600-140015600	Weak transcription	NHDF-Ad	bronchial
11	chr7:140011600-140016400	Enhancers	Primary B cells from cord blood	blood
12	chr7:140012400-140014600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:140013200-140013600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:140013200-140013800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr7:140013200-140014600	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:140013200-140015000	Weak transcription	Esophagus	oesophagus
17	chr7:140013200-140015000	Weak transcription	Gastric	stomach
18	chr7:140013200-140015600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:140013200-140017800	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links