Variant report

Variant	rs12672467
Chromosome Location	chr7:26476827-26476828
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11979799	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1229671	1.00[CEU][hapmap]
rs12669192	1.00[CHB][hapmap]
rs12674232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3801887	1.00[YRI][hapmap]
rs73074121	1.00[ASN][1000 genomes]
rs7794019	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv606461	chr7:26460409-26485860	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26460600-26484600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:26466400-26479200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:26466400-26479200	Weak transcription	Fetal Brain Female	brain
4	chr7:26470600-26480400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:26475200-26478200	Enhancers	Fetal Kidney	kidney
6	chr7:26475200-26479800	Weak transcription	K562	blood
7	chr7:26475800-26477000	Enhancers	Fetal Brain Male	brain
8	chr7:26476200-26478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:26476400-26477200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:26476600-26477000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:26476600-26477200	Enhancers	Brain Germinal Matrix	brain
12	chr7:26476600-26478200	Enhancers	Fetal Lung	lung
13	chr7:26476600-26478200	Enhancers	Fetal Stomach	stomach
14	chr7:26476800-26477000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:26476800-26478000	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:26476800-26479000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links