Variant report

Variant	rs12673992
Chromosome Location	chr7:120372823-120372824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10239799	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3823861	0.80[ASW][hapmap]
rs6968447	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs727228	0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12673992	SPAM1	cis	parietal	SCAN
rs12673992	ST7	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:120356200-120373000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:120365000-120380600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:120369800-120373000	Weak transcription	NH-A	brain
4	chr7:120369800-120377600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr7:120370800-120374400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr7:120371400-120374000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:120371600-120373200	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:120371600-120373600	Enhancers	NHLF	lung
9	chr7:120371600-120373800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:120372600-120373800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:120372800-120373000	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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