Variant report

Variant	rs12676132
Chromosome Location	chr8:89563188-89563189
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10093191	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10095262	0.96[EUR][1000 genomes]
rs10095499	0.96[EUR][1000 genomes]
rs10096195	0.96[EUR][1000 genomes]
rs10098834	0.96[EUR][1000 genomes]
rs10099075	0.96[EUR][1000 genomes]
rs10099233	0.96[EUR][1000 genomes]
rs10099461	0.96[EUR][1000 genomes]
rs10103178	0.90[EUR][1000 genomes]
rs10103336	0.96[EUR][1000 genomes]
rs10103474	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10110453	0.96[EUR][1000 genomes]
rs10112810	0.96[EUR][1000 genomes]
rs10113214	0.96[EUR][1000 genomes]
rs10504839	0.96[EUR][1000 genomes]
rs11995730	0.96[EUR][1000 genomes]
rs12680992	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1394515	1.00[CEU][hapmap]
rs16881745	0.96[EUR][1000 genomes]
rs16882035	0.96[EUR][1000 genomes]
rs16882334	0.96[EUR][1000 genomes]
rs16882368	0.96[EUR][1000 genomes]
rs16882408	0.96[EUR][1000 genomes]
rs16882464	0.96[EUR][1000 genomes]
rs16882621	0.96[EUR][1000 genomes]
rs16882622	0.96[EUR][1000 genomes]
rs16882960	0.96[EUR][1000 genomes]
rs16882980	0.96[EUR][1000 genomes]
rs28414285	0.96[EUR][1000 genomes]
rs28453085	0.90[EUR][1000 genomes]
rs28581869	0.96[EUR][1000 genomes]
rs28758406	0.90[EUR][1000 genomes]
rs28768402	0.96[EUR][1000 genomes]
rs55743536	0.96[EUR][1000 genomes]
rs55848977	0.96[EUR][1000 genomes]
rs56324438	0.96[EUR][1000 genomes]
rs56691611	0.96[EUR][1000 genomes]
rs57047577	0.96[EUR][1000 genomes]
rs57771217	0.94[EUR][1000 genomes]
rs58164144	0.96[EUR][1000 genomes]
rs58337229	0.96[EUR][1000 genomes]
rs58399951	0.96[EUR][1000 genomes]
rs58414801	0.96[EUR][1000 genomes]
rs58453379	0.96[EUR][1000 genomes]
rs58698384	0.88[EUR][1000 genomes]
rs58720276	0.96[EUR][1000 genomes]
rs58723841	0.90[EUR][1000 genomes]
rs58754325	0.96[EUR][1000 genomes]
rs58994609	0.96[EUR][1000 genomes]
rs59043278	0.96[EUR][1000 genomes]
rs59107062	0.96[EUR][1000 genomes]
rs59119264	0.96[EUR][1000 genomes]
rs59290812	0.96[EUR][1000 genomes]
rs59425875	0.96[EUR][1000 genomes]
rs59430846	0.96[EUR][1000 genomes]
rs59484067	0.96[EUR][1000 genomes]
rs59580800	0.96[EUR][1000 genomes]
rs59645827	0.96[EUR][1000 genomes]
rs60245117	0.96[EUR][1000 genomes]
rs60336907	0.96[EUR][1000 genomes]
rs60779425	0.93[EUR][1000 genomes]
rs60953371	0.96[EUR][1000 genomes]
rs61088422	0.96[EUR][1000 genomes]
rs61109805	0.96[EUR][1000 genomes]
rs61177731	0.96[EUR][1000 genomes]
rs6469419	0.94[EUR][1000 genomes]
rs6980734	0.96[EUR][1000 genomes]
rs6982579	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6988021	0.96[EUR][1000 genomes]
rs6988958	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7000891	0.96[EUR][1000 genomes]
rs7001241	0.96[EUR][1000 genomes]
rs7001875	0.96[EUR][1000 genomes]
rs7004757	0.96[EUR][1000 genomes]
rs7005386	0.96[EUR][1000 genomes]
rs7018226	0.96[EUR][1000 genomes]
rs73277124	0.96[EUR][1000 genomes]
rs73279213	0.96[EUR][1000 genomes]
rs73279219	0.96[EUR][1000 genomes]
rs73279224	0.96[EUR][1000 genomes]
rs73279231	0.96[EUR][1000 genomes]
rs73289232	0.96[EUR][1000 genomes]
rs73289254	0.96[EUR][1000 genomes]
rs73289257	0.96[EUR][1000 genomes]
rs73289264	0.96[EUR][1000 genomes]
rs73289267	0.96[EUR][1000 genomes]
rs73291151	0.96[EUR][1000 genomes]
rs73291153	0.96[EUR][1000 genomes]
rs73291154	0.96[EUR][1000 genomes]
rs73291157	0.96[EUR][1000 genomes]
rs73291159	0.96[EUR][1000 genomes]
rs73291160	0.96[EUR][1000 genomes]
rs73291164	0.96[EUR][1000 genomes]
rs73291166	0.96[EUR][1000 genomes]
rs73291175	0.96[EUR][1000 genomes]
rs73291177	0.96[EUR][1000 genomes]
rs73291179	0.96[EUR][1000 genomes]
rs73291181	0.96[EUR][1000 genomes]
rs73291190	0.96[EUR][1000 genomes]
rs73291191	0.96[EUR][1000 genomes]
rs73692571	0.96[EUR][1000 genomes]
rs73694046	0.96[EUR][1000 genomes]
rs73694050	0.94[EUR][1000 genomes]
rs73694056	0.96[EUR][1000 genomes]
rs73694057	0.96[EUR][1000 genomes]
rs7462228	1.00[CEU][hapmap]
rs7814792	0.96[EUR][1000 genomes]
rs7814799	0.96[EUR][1000 genomes]
rs7845586	0.96[EUR][1000 genomes]
rs9297468	0.96[EUR][1000 genomes]
rs9297469	0.93[EUR][1000 genomes]
rs9297470	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891173	chr8:89509223-89996790	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1024633	chr8:89517079-89959574	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539666	chr8:89517079-89959574	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1027744	chr8:89526571-89609651	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv429927	chr8:89529845-89609684	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv520279	chr8:89534091-89607437	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023877	chr8:89552013-89900874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89562600-89563400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:89562600-89563400	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links