Variant report

Variant	rs12676699
Chromosome Location	chr8:114407694-114407695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10089887	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12545155	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12678354	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1382467	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1398811	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1513515	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1513524	0.84[EUR][1000 genomes]
rs1551957	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28696718	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2927865	0.85[EUR][1000 genomes]
rs2927869	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927870	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927871	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2927872	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2942848	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2942851	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2942852	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2942853	0.85[EUR][1000 genomes]
rs2954881	0.85[EUR][1000 genomes]
rs4311682	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4354335	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4531082	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4593574	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6469455	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7003686	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7839252	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7839352	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9297493	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9649937	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs966371	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019362	chr8:114377031-114419106	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031488	chr8:114382671-114419106	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1803306	chr8:114406930-114423622	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114399800-114415000	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links