Variant report

Variant	rs12677122
Chromosome Location	chr8:112901114-112901115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10955610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12541008	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12546646	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12549576	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12675200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12679331	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681651	0.83[ASN][1000 genomes]
rs1510565	0.86[ASN][1000 genomes]
rs16882968	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16883001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16883061	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2352574	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4454307	0.86[ASN][1000 genomes]
rs57000389	0.86[AMR][1000 genomes]
rs57513985	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59996303	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs716313	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73324331	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73324391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73331414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73335206	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73335215	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73335220	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9693350	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv6350	chr8:112864932-112909643	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112900800-112901800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:112901000-112901600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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