Variant report

Variant	rs12677975
Chromosome Location	chr8:119977394-119977395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119976393..119979108-chr8:119979749..119981302,2	MCF-7	breast:
2	chr2:172290246..172291840-chr8:119977320..119979551,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115827	Chromatin interaction
ENSG00000123600	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10505350	0.91[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10505352	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10955917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10955918	0.86[EUR][1000 genomes]
rs10955920	0.86[EUR][1000 genomes]
rs10955921	0.86[EUR][1000 genomes]
rs11573819	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573828	1.00[CEU][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573849	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573870	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11573897	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11573905	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11985044	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11986345	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11987514	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11987528	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11990877	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11992045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11992070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11992072	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11992370	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11992916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11994357	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12056490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12056749	0.86[EUR][1000 genomes]
rs12056908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs12675217	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676636	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12677367	0.86[EUR][1000 genomes]
rs12678216	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12679567	0.86[EUR][1000 genomes]
rs12680862	0.91[EUR][1000 genomes]
rs12681528	0.86[EUR][1000 genomes]
rs1385507	0.86[EUR][1000 genomes]
rs1385508	0.86[EUR][1000 genomes]
rs1485311	0.86[EUR][1000 genomes]
rs16891854	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891856	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891859	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891861	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891864	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891869	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891872	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891875	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16891907	0.82[EUR][1000 genomes]
rs16891911	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs16891913	1.00[CEU][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes]
rs17758108	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17758126	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17758162	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17758186	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17758222	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17758258	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17758330	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17831135	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17831147	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17831171	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17831322	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3924060	0.86[EUR][1000 genomes]
rs4437685	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4565488	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56655201	0.91[EUR][1000 genomes]
rs56764969	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56862071	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57733873	0.82[EUR][1000 genomes]
rs58729255	0.91[EUR][1000 genomes]
rs58732819	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59027630	0.82[ASN][1000 genomes]
rs59943296	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60012832	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60335297	0.86[EUR][1000 genomes]
rs60360696	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60727179	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61364754	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61679139	0.82[EUR][1000 genomes]
rs61706918	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6469791	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6996974	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73709519	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73709526	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73711408	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73711412	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7823809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826524	0.88[ASN][1000 genomes]
rs7829123	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7835846	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7837123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs923100	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9642843	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119974800-119978200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:119974800-119978800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:119974800-119982400	Weak transcription	Osteobl	bone
4	chr8:119975000-119980600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:119975400-119978000	Weak transcription	Hela-S3	cervix
6	chr8:119977000-119978000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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