The 2.0 version of rSNPBase
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Variant report
Variant
rs12678956
Chromosome Location
chr8:110714295-110714296
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr12:70269277..70270233-chr8:110714271..110715028,2
MCF-7
breast:
2
chr8:110347445..110349148-chr8:110712689..110714629,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000120533
Chromatin interaction
Extended variants information (count: 3 )
Associated traits (count: 2 )
rSNPs within LD-proxies of this variant (count:3)
rs_ID
r
2
[population]
rs1954713
1.00[LWK][hapmap];1.00[MKK][hapmap]
rs2236627
1.00[LWK][hapmap];1.00[MKK][hapmap]
rs3808380
1.00[LWK][hapmap]
mRNA abundance (count:2)
SNP
Gene
Cis/trans
Tissue
Source
rs12678956
PKHD1L1
cis
lymphoblastoid
seeQTL
rs12678956
PKHD1L1
Cis_1M
lymphoblastoid
RTeQTL
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links