Variant report

Variant	rs12679359
Chromosome Location	chr8:130724556-130724557
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10091174	0.83[ASN][1000 genomes]
rs2062078	0.97[CHD][hapmap];0.90[MEX][hapmap]
rs3886938	0.97[CHD][hapmap];0.90[MEX][hapmap]
rs4425724	0.80[CHB][hapmap]
rs6470764	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8387	chr8:130711059-130756654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv891447	chr8:130724556-130754719	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130719800-130725600	Enhancers	K562	blood
2	chr8:130720600-130724800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:130720800-130725600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:130721000-130724600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:130721600-130725400	Weak transcription	HSMMtube	muscle
6	chr8:130721600-130725600	Weak transcription	Fetal Stomach	stomach
7	chr8:130722200-130724600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:130722400-130725000	Weak transcription	Fetal Lung	lung
9	chr8:130723200-130734600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:130723400-130725000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:130723400-130725000	Weak transcription	Placenta	Placenta
12	chr8:130723400-130725400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:130723400-130726800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:130723400-130740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:130723600-130725200	Weak transcription	NHDF-Ad	bronchial
16	chr8:130723600-130725600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:130723800-130725200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:130724000-130725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:130724000-130726200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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