Variant report
| Variant | rs12679651 |
|---|---|
| Chromosome Location | chr8:85142500-85142501 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:34795663..34796225-chr8:85142407..85143298,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10504792 | 0.88[JPT][hapmap] |
| rs10504796 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap] |
| rs10504799 | 0.88[JPT][hapmap] |
| rs12675795 | 0.88[JPT][hapmap] |
| rs12676075 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs12680668 | 0.88[JPT][hapmap] |
| rs16912577 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs16912578 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs16912587 | 0.88[JPT][hapmap] |
| rs16912588 | 0.88[JPT][hapmap] |
| rs16912599 | 0.88[JPT][hapmap] |
| rs16912601 | 0.87[JPT][hapmap] |
| rs16912613 | 0.88[JPT][hapmap] |
| rs16912618 | 0.88[JPT][hapmap] |
| rs16912624 | 0.87[JPT][hapmap] |
| rs16912630 | 0.86[JPT][hapmap] |
| rs16912644 | 0.88[JPT][hapmap] |
| rs16912699 | 0.88[JPT][hapmap] |
| rs7813477 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
| rs7813525 | 1.00[CHB][hapmap];0.88[JPT][hapmap] |
| rs7828432 | 0.93[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753846 | chr8:84637092-85239703 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv831374 | chr8:85103604-85308976 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
