Variant report
| Variant | rs12680568 |
|---|---|
| Chromosome Location | chr8:132006412-132006413 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs11774179 | 0.88[EUR][1000 genomes] |
| rs11774222 | 0.88[EUR][1000 genomes] |
| rs11775729 | 0.80[AMR][1000 genomes] |
| rs11778567 | 0.84[EUR][1000 genomes] |
| rs11784371 | 0.88[EUR][1000 genomes] |
| rs11784418 | 0.88[EUR][1000 genomes] |
| rs11784784 | 0.88[EUR][1000 genomes] |
| rs11784937 | 0.88[EUR][1000 genomes] |
| rs11988309 | 0.83[AFR][1000 genomes] |
| rs12680529 | 1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13249674 | 0.80[EUR][1000 genomes] |
| rs13260940 | 0.88[EUR][1000 genomes] |
| rs13261265 | 0.88[EUR][1000 genomes] |
| rs13276752 | 0.88[EUR][1000 genomes] |
| rs13276850 | 0.88[EUR][1000 genomes] |
| rs13281591 | 0.88[EUR][1000 genomes] |
| rs1329799 | 0.88[EUR][1000 genomes] |
| rs1329805 | 0.88[EUR][1000 genomes] |
| rs16904395 | 0.83[AFR][1000 genomes] |
| rs16904398 | 0.88[EUR][1000 genomes] |
| rs2026755 | 0.88[EUR][1000 genomes] |
| rs34359920 | 0.88[EUR][1000 genomes] |
| rs34396484 | 0.88[EUR][1000 genomes] |
| rs34620076 | 0.88[EUR][1000 genomes] |
| rs35687211 | 0.88[EUR][1000 genomes] |
| rs35721413 | 0.88[EUR][1000 genomes] |
| rs4389913 | 0.88[EUR][1000 genomes] |
| rs59808230 | 0.88[EUR][1000 genomes] |
| rs6470884 | 0.88[EUR][1000 genomes] |
| rs71522600 | 0.88[EUR][1000 genomes] |
| rs71522601 | 0.88[EUR][1000 genomes] |
| rs71522602 | 0.88[EUR][1000 genomes] |
| rs71524503 | 0.88[EUR][1000 genomes] |
| rs71524504 | 0.88[EUR][1000 genomes] |
| rs71524505 | 0.88[EUR][1000 genomes] |
| rs7844745 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030881 | chr8:131801472-132654822 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1028579 | chr8:131909872-132497149 | Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026579 | chr8:131922531-132695045 | Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | esv2761471 | chr8:131963290-132281905 | Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:131997400-132020000 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
