Variant report

Variant	rs12682881
Chromosome Location	chr9:117551453-117551454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr9:117551389-117551567	MCF10A-Er-Src	breast:	n/a	n/a
2	BRCA1	chr9:117551368-117551588	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr9:117551398-117551600	Hela-S3	cervix:	n/a	n/a
4	NFIC	chr9:117551388-117551701	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr9:117551187-117551641	SK-N-SH	brain:	n/a	n/a
6	EP300	chr9:117551394-117551582	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000221734	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12682886	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16931739	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16931745	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16931748	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16931761	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55958817	0.94[ASN][1000 genomes]
rs56127109	0.94[ASN][1000 genomes]
rs56177810	0.94[ASN][1000 genomes]
rs56195769	0.94[ASN][1000 genomes]
rs7860414	0.94[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117542000-117561800	Weak transcription	Pancreas	Pancrea
2	chr9:117542400-117552600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:117542400-117561200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:117542800-117560200	Weak transcription	A549	lung
5	chr9:117543200-117552400	Weak transcription	HUVEC	blood vessel
6	chr9:117545400-117561400	Weak transcription	Gastric	stomach
7	chr9:117547400-117552800	Weak transcription	Lung	lung
8	chr9:117547800-117561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:117548000-117557000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:117548000-117565400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:117548400-117561800	Weak transcription	Esophagus	oesophagus
12	chr9:117548800-117560200	Weak transcription	Fetal Stomach	stomach
13	chr9:117549400-117560800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:117549600-117551600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:117549600-117551600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:117549600-117551600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:117549600-117551600	Enhancers	HMEC	breast
18	chr9:117549600-117552200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:117549600-117552800	Weak transcription	Primary B cells from cord blood	blood
20	chr9:117549800-117551600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:117550400-117551600	Enhancers	NHEK	skin
22	chr9:117550400-117552200	Weak transcription	Placenta	Placenta
23	chr9:117550400-117553200	Strong transcription	Fetal Intestine Small	intestine
24	chr9:117550600-117551600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr9:117551200-117552600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr9:117551200-117552800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr9:117551200-117555000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr9:117551200-117555800	Strong transcription	Fetal Intestine Large	intestine

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