Variant report

Variant	rs12685752
Chromosome Location	chr9:96679092-96679093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96678251..96680846-chr9:96690063..96691952,2	MCF-7	breast:
2	chr9:96670566..96673928-chr9:96676412..96679551,4	K562	blood:
3	chr9:96676732..96679654-chr9:96681245..96683320,2	MCF-7	breast:
4	chr9:96673909..96678084-chr9:96678410..96682250,3	K562	blood:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10821265	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821266	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10821268	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10821269	0.88[ASN][1000 genomes]
rs10821270	0.88[ASN][1000 genomes]
rs10821271	0.88[ASN][1000 genomes]
rs10992983	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992985	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992986	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10992987	0.85[ASN][1000 genomes]
rs10992989	0.85[ASN][1000 genomes]
rs10992990	0.84[ASN][1000 genomes]
rs10992991	0.84[ASN][1000 genomes]
rs10992993	0.84[ASN][1000 genomes]
rs12002825	0.84[ASN][1000 genomes]
rs12156572	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12156575	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12156596	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12156646	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12375881	0.85[ASN][1000 genomes]
rs12377040	0.87[ASN][1000 genomes]
rs12377238	0.84[ASN][1000 genomes]
rs12683201	0.84[ASN][1000 genomes]
rs12683978	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12684253	0.84[ASN][1000 genomes]
rs12685500	0.84[ASN][1000 genomes]
rs16909596	0.84[ASN][1000 genomes]
rs1890382	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933676	0.84[ASN][1000 genomes]
rs1933677	0.84[ASN][1000 genomes]
rs2095776	0.88[ASN][1000 genomes]
rs2153068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153069	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55984014	0.84[ASN][1000 genomes]
rs56023244	0.84[ASN][1000 genomes]
rs56056624	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56149416	0.84[ASN][1000 genomes]
rs56218521	0.84[ASN][1000 genomes]
rs56310704	0.84[ASN][1000 genomes]
rs56677923	0.84[ASN][1000 genomes]
rs57777894	0.87[ASN][1000 genomes]
rs58261080	0.84[ASN][1000 genomes]
rs59292216	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59635608	0.84[ASN][1000 genomes]
rs59731822	0.87[ASN][1000 genomes]
rs59853604	0.84[ASN][1000 genomes]
rs59879437	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60396345	0.84[ASN][1000 genomes]
rs60508020	0.84[ASN][1000 genomes]
rs60708208	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60812510	0.84[ASN][1000 genomes]
rs60942558	0.84[ASN][1000 genomes]
rs61433932	0.84[ASN][1000 genomes]
rs66667702	0.84[ASN][1000 genomes]
rs67006132	0.84[ASN][1000 genomes]
rs67569294	0.87[ASN][1000 genomes]
rs7023513	0.87[ASN][1000 genomes]
rs7028921	0.87[ASN][1000 genomes]
rs7038359	0.87[ASN][1000 genomes]
rs7039765	0.87[ASN][1000 genomes]
rs7042729	0.87[ASN][1000 genomes]
rs73517149	0.84[ASN][1000 genomes]
rs7858507	0.88[ASN][1000 genomes]
rs7860425	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7861231	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7875295	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7875690	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1053137	chr9:96644876-96683214	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1046904	chr9:96647940-96689327	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv1801607	chr9:96657324-96683214	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1042043	chr9:96657324-96689327	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3356472	chr9:96677831-96682029	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96671400-96679600	Weak transcription	Gastric	stomach
2	chr9:96677000-96685200	Weak transcription	Spleen	Spleen
3	chr9:96679000-96680000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:96679000-96682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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