Variant report

Variant	rs1268733
Chromosome Location	chr11:34343953-34343954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34340006..34344767-chr11:34350658..34354959,5	MCF-7	breast:
2	chr11:34340373..34342036-chr11:34343616..34346378,2	MCF-7	breast:
3	chr11:34342106..34344369-chr11:34352747..34354682,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11607456	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1268732	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1270184	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61079956	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72916710	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72916711	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72916714	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757435	chr11:34220504-34370236	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2759816	chr11:34220504-34370236	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv818809	chr11:34239730-34354076	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2753052	chr11:34247462-34358300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv897205	chr11:34248229-34507213	Enhancers Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv897207	chr11:34253683-34621004	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv897208	chr11:34257064-34562247	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv897209	chr11:34309519-34548906	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv818810	chr11:34337564-34354076	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv2753225	chr11:34338342-34354865	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv983001	chr11:34341904-34346211	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34332800-34346200	Weak transcription	Lung	lung
2	chr11:34336200-34358200	Weak transcription	Thymus	Thymus
3	chr11:34337800-34349000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:34338600-34344200	Weak transcription	Fetal Stomach	stomach
5	chr11:34339000-34345800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:34339000-34349000	Weak transcription	Brain Anterior Caudate	brain
7	chr11:34339000-34357400	Weak transcription	Fetal Thymus	thymus
8	chr11:34339200-34345800	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:34340000-34353200	Weak transcription	Small Intestine	intestine
10	chr11:34340200-34346000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:34340600-34349200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:34340800-34344800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:34340800-34345000	Weak transcription	NHDF-Ad	bronchial
14	chr11:34340800-34349000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:34340800-34352200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:34341000-34344200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:34341000-34345800	Weak transcription	Right Atrium	heart
18	chr11:34341000-34345800	Weak transcription	HSMMtube	muscle
19	chr11:34341000-34346000	Weak transcription	Aorta	Aorta
20	chr11:34341000-34348600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:34341000-34348800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:34341000-34349000	Weak transcription	Pancreas	Pancrea
23	chr11:34341000-34352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr11:34341200-34345000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:34341200-34348400	Weak transcription	Left Ventricle	heart
26	chr11:34341200-34352200	Weak transcription	HSMM	muscle
27	chr11:34342200-34344800	Weak transcription	Liver	Liver
28	chr11:34342200-34345600	Weak transcription	Psoas Muscle	Psoas
29	chr11:34342400-34345000	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:34342400-34345000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr11:34342400-34345000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:34343600-34344400	Weak transcription	Placenta	Placenta
33	chr11:34343600-34344800	Enhancers	Ovary	ovary
34	chr11:34343600-34346000	Weak transcription	Right Ventricle	heart
35	chr11:34343600-34350800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:34343800-34345000	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links