Variant report

Variant	rs1269215
Chromosome Location	chr19:36037896-36037897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:36037670-36038390	HepG2	liver:	n/a	n/a
2	POLR2A	chr19:36037735-36038101	K562	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:36034283..36038136-chr19:36206970..36210335,6	K562	blood:
2	chr19:35980525..35983715-chr19:36035506..36037997,3	MCF-7	breast:
3	chr19:36036052..36039030-chr19:36108964..36111684,2	MCF-7	breast:
4	chr19:36017903..36025007-chr19:36033754..36038299,7	MCF-7	breast:
5	chr19:35999552..36006251-chr19:36031120..36038105,13	MCF-7	breast:
6	chr19:36034987..36038890-chr19:36118307..36121069,4	MCF-7	breast:
7	chr19:36035457..36038261-chr19:36205897..36210098,5	MCF-7	breast:
8	chr19:36035974..36038022-chr19:36207371..36209822,3	MCF-7	breast:
9	chr19:36035683..36038067-chr19:36234353..36237102,3	K562	blood:
10	chr19:36034638..36039287-chr19:36205354..36210335,7	K562	blood:
11	chr19:35888829..35890481-chr19:36037257..36038974,2	MCF-7	breast:
12	chr19:36037135..36039903-chr19:36503878..36506740,2	K562	blood:
13	chr19:35758851..35760622-chr19:36036103..36038320,2	MCF-7	breast:
14	chr19:35807878..35810423-chr19:36035383..36039227,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236144	TF binding region
ENSG00000188223	Chromatin interaction
ENSG00000267120	Chromatin interaction
ENSG00000105679	Chromatin interaction
ENSG00000012124	Chromatin interaction
ENSG00000267698	Chromatin interaction
ENSG00000161265	Chromatin interaction
ENSG00000126254	Chromatin interaction
ENSG00000105698	Chromatin interaction
ENSG00000272333	Chromatin interaction
ENSG00000205786	Chromatin interaction
ENSG00000239382	Chromatin interaction
ENSG00000188508	Chromatin interaction
ENSG00000161249	Chromatin interaction
ENSG00000249115	Chromatin interaction
ENSG00000205155	Chromatin interaction
ENSG00000189001	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34234254	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv911628	chr19:35999491-36056253	Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36037000-36038200	Weak transcription	Aorta	Aorta
2	chr19:36037200-36038000	Flanking Active TSS	Duodenum Mucosa	Duodenum
3	chr19:36037200-36038000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr19:36037200-36038000	Flanking Active TSS	GM12878-XiMat	blood
5	chr19:36037200-36038400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr19:36037400-36038000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:36037400-36038000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr19:36037400-36038000	Enhancers	Primary B cells from cord blood	blood
9	chr19:36037400-36038000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr19:36037400-36038000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr19:36037400-36038000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr19:36037400-36038000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:36037400-36038000	Enhancers	Liver	Liver
14	chr19:36037400-36038000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr19:36037400-36038000	Enhancers	Fetal Brain Male	brain
16	chr19:36037400-36038000	Genic enhancers	Fetal Muscle Leg	muscle
17	chr19:36037400-36038000	Genic enhancers	Fetal Stomach	stomach
18	chr19:36037400-36038000	Enhancers	Fetal Thymus	thymus
19	chr19:36037400-36038000	Enhancers	Gastric	stomach
20	chr19:36037400-36038000	Enhancers	Left Ventricle	heart
21	chr19:36037400-36038000	Enhancers	Lung	lung
22	chr19:36037400-36038000	Flanking Active TSS	HMEC	breast
23	chr19:36037400-36038000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr19:36037400-36038200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr19:36037400-36038400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr19:36037400-36038800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr19:36037400-36038800	Genic enhancers	Brain Germinal Matrix	brain
28	chr19:36037400-36040200	Weak transcription	Fetal Kidney	kidney
29	chr19:36037600-36038000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:36037600-36038000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr19:36037600-36038000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr19:36037600-36038000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr19:36037600-36038000	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:36037600-36038000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr19:36037600-36038000	Enhancers	Brain Anterior Caudate	brain
36	chr19:36037600-36038000	Enhancers	Brain Hippocampus Middle	brain
37	chr19:36037600-36038000	Enhancers	Brain Substantia Nigra	brain
38	chr19:36037600-36038000	Transcr. at gene 5' and 3'	Fetal Brain Female	brain
39	chr19:36037600-36038000	Genic enhancers	Fetal Muscle Trunk	muscle
40	chr19:36037600-36038000	Genic enhancers	Ovary	ovary
41	chr19:36037600-36038000	Enhancers	Spleen	Spleen
42	chr19:36037600-36038000	Enhancers	HUVEC	blood vessel
43	chr19:36037600-36038200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr19:36037600-36038200	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr19:36037600-36038200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:36037600-36038200	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr19:36037600-36038200	Genic enhancers	Right Ventricle	heart
48	chr19:36037600-36038200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
49	chr19:36037600-36038200	Genic enhancers	Thymus	Thymus
50	chr19:36037600-36038400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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